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The map label for this gene is ypdB [C]

Identifier: 187928316

GI number: 187928316

Start: 1315178

End: 1316011

Strand: Direct

Name: ypdB [C]

Synonym: Rpic_1227

Alternate gene names: 187928316

Gene position: 1315178-1316011 (Clockwise)

Preceding gene: 187928315

Following gene: 187928317

Centisome position: 33.36

GC content: 66.91

Gene sequence:

>834_bases
ATGCCTGCTTCCCCACGCTTGCTGATTGCCGACGACGAACCGGCACTGGCTGAGAACCTCGTCGCTGAACTGGCGGCGCT
ATGGCCCGAGGCCACGTTGCTGCCGGCCGTGCACGATGGGCAATCCGCGCTCGACGTGGTTGACGACGCGGCCGACGGGC
AGGCGCCCGATGTGGTCTTTCTCGACATCCGCATGCCGGGGTTGTCGGGCATTGACGTGGCGCGCGAGCTGTCGGATCGG
GAAGACCGTCCGCTGGTGGTGTTCGTGACCGCGTATGACCAGTTCGCGCTCGATGCCTTCGAGCAGGCCGCGGTCGACTA
CGTGCTCAAGCCCGTGCAGACCGAGCGCCTGGCCGAGACCATCAAGCGGCTGAAGGACCGGCTCGGCACGCGCCCGAACG
GCAACGCCAGCGCCGCTGCCACGGACCCCGCGCAGACGCTGGCGGAACTCGTCGAGCGTCTTGCCGGCCTGCAGGGCGCT
GCGCAAACGCGTGCCACGCCGCAGGGCGGCTATCTGCGCTTTATCAAGGCGCTGGTCGGGCAGGAGGTGCGCTTCATCCC
CGTGGATGACGTGATCTATCTGGAAGCGACCGACAAGTACGTCAACGTGGTTTCGGCCAGCGGAGAATCCCTCATCCGCA
CCAGCCTGCGTGACCTGCTGACCCAGCTCGACCCCGAGCACTTCTGGCAGGTGCATCGCGGTACGGTGGTCAACGTGGCG
CATGTGTCGAGCGCGGTGCATCTGTCGCTGGGCCGCCTGGGGCTGAAAATCCGCGGGCGCACCGAGACGCTGCCCGTCGC
GCGGCAATACGCACATTTGTTCCGCCAGATGTAG

Upstream 100 bases:

>100_bases
AGCCGACGCGCCGGAATGGCGCTGCCGCTTTTCGCGCTCCGCGGCCAACGCCACTGCCACCGATGCACTGTCTTCGCGCG
TATCCGCCGGAACCTGATCG

Downstream 100 bases:

>100_bases
TCGCCACGGCGGCGCGTTCCGCTATGATCCATCGTGTCGTCAACGGATCGAGAGCGCGAGCACCCGCCATGGAGACACCA
GCCGCACGCCCCGCCAGCCT

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPASPRLLIADDEPALAENLVAELAALWPEATLLPAVHDGQSALDVVDDAADGQAPDVVFLDIRMPGLSGIDVARELSDR
EDRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAETIKRLKDRLGTRPNGNASAAATDPAQTLAELVERLAGLQGA
AQTRATPQGGYLRFIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHRGTVVNVA
HVSSAVHLSLGRLGLKIRGRTETLPVARQYAHLFRQM

Sequences:

>Translated_277_residues
MPASPRLLIADDEPALAENLVAELAALWPEATLLPAVHDGQSALDVVDDAADGQAPDVVFLDIRMPGLSGIDVARELSDR
EDRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAETIKRLKDRLGTRPNGNASAAATDPAQTLAELVERLAGLQGA
AQTRATPQGGYLRFIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHRGTVVNVA
HVSSAVHLSLGRLGLKIRGRTETLPVARQYAHLFRQM
>Mature_276_residues
PASPRLLIADDEPALAENLVAELAALWPEATLLPAVHDGQSALDVVDDAADGQAPDVVFLDIRMPGLSGIDVARELSDRE
DRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAETIKRLKDRLGTRPNGNASAAATDPAQTLAELVERLAGLQGAA
QTRATPQGGYLRFIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHRGTVVNVAH
VSSAVHLSLGRLGLKIRGRTETLPVARQYAHLFRQM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=275, Percent_Identity=25.8181818181818, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082052, Length=266, Percent_Identity=29.6992481203008, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788550, Length=125, Percent_Identity=34.4, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30204; Mature: 30072

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASPRLLIADDEPALAENLVAELAALWPEATLLPAVHDGQSALDVVDDAADGQAPDVVF
CCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEE
LDIRMPGLSGIDVARELSDREDRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAET
EEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
IKRLKDRLGTRPNGNASAAATDPAQTLAELVERLAGLQGAAQTRATPQGGYLRFIKALVG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHC
QEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHRGTVVNVA
CCEEEEECCCEEEEEECCHHHEEHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHH
HVSSAVHLSLGRLGLKIRGRTETLPVARQYAHLFRQM
HHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
PASPRLLIADDEPALAENLVAELAALWPEATLLPAVHDGQSALDVVDDAADGQAPDVVF
CCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEE
LDIRMPGLSGIDVARELSDREDRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAET
EEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
IKRLKDRLGTRPNGNASAAATDPAQTLAELVERLAGLQGAAQTRATPQGGYLRFIKALVG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHC
QEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHRGTVVNVA
CCEEEEECCCEEEEEECCHHHEEHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHH
HVSSAVHLSLGRLGLKIRGRTETLPVARQYAHLFRQM
HHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA