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The map label for this gene is ygaF [H]

Identifier: 187928281

GI number: 187928281

Start: 1279515

End: 1279979

Strand: Reverse

Name: ygaF [H]

Synonym: Rpic_1192

Alternate gene names: 187928281

Gene position: 1279979-1279515 (Counterclockwise)

Preceding gene: 187928282

Following gene: 187928280

Centisome position: 32.47

GC content: 59.35

Gene sequence:

>465_bases
ATGCCTGTCACGCTCGACCAGCCTCTTCCCGATTTCTCCGCACCGGCCACCAGTGGCATCACGTTCTCGCCGGCGTCACA
GCGCGGCAAGATCGTCGTGCTGTATTTCTATCCGAAGGACAACACCCCCGGCTGCACCACCGAGGCGATGAACTTCCGTG
ACCAGTACGACGCCTTTGAAGCCGCCGGCGCCGTGGTGTTCGGCATCTCGCGCGACAGCCTGAAATCGCACGAAAACTTC
AAGGCGAAACTGGAGATGCCGTTCGAGCTGATTTCCGACGCCGACGAAGCCGTCTGCAACATCTTTGACACGATCAAGAT
GAAGAAGATGTACGGCAAGGACGTGCGCGGCATCGAGCGCAGCACATTCCTGATCGACAACAAGGGCGTGCTGCGCAGGG
AATGGCGTGGCGTGAAAGTGCCCAACCATGTGGATGATGTTCTGACGGCGGTACGCGCGCTGTAA

Upstream 100 bases:

>100_bases
CCTGATCCTCACGATCTCCAGTCGGGCGGCAGGCGCAGCGCCTGAGCATTGCCCGTCCACGAGCTTTCCGTCTCTTCCCC
GCGGTTTTCCGGAACACACC

Downstream 100 bases:

>100_bases
CAGCAAGGTAGCCACCCGTCGGAAAAGCGCCCGTACGGCTTCTGGCGTTTGCTTTTCCGTCGATTTCGCATCGTCCGTCG
TGATCAGTTTGCGCCGCACC

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPVTLDQPLPDFSAPATSGITFSPASQRGKIVVLYFYPKDNTPGCTTEAMNFRDQYDAFEAAGAVVFGISRDSLKSHENF
KAKLEMPFELISDADEAVCNIFDTIKMKKMYGKDVRGIERSTFLIDNKGVLRREWRGVKVPNHVDDVLTAVRAL

Sequences:

>Translated_154_residues
MPVTLDQPLPDFSAPATSGITFSPASQRGKIVVLYFYPKDNTPGCTTEAMNFRDQYDAFEAAGAVVFGISRDSLKSHENF
KAKLEMPFELISDADEAVCNIFDTIKMKKMYGKDVRGIERSTFLIDNKGVLRREWRGVKVPNHVDDVLTAVRAL
>Mature_153_residues
PVTLDQPLPDFSAPATSGITFSPASQRGKIVVLYFYPKDNTPGCTTEAMNFRDQYDAFEAAGAVVFGISRDSLKSHENFK
AKLEMPFELISDADEAVCNIFDTIKMKKMYGKDVRGIERSTFLIDNKGVLRREWRGVKVPNHVDDVLTAVRAL

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788825, Length=143, Percent_Identity=38.4615384615385, Blast_Score=99, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322180, Length=88, Percent_Identity=37.5, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17738015, Length=163, Percent_Identity=31.2883435582822, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17210; Mature: 17079

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTLDQPLPDFSAPATSGITFSPASQRGKIVVLYFYPKDNTPGCTTEAMNFRDQYDAFE
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCHHHHCCHHHHHHHH
AAGAVVFGISRDSLKSHENFKAKLEMPFELISDADEAVCNIFDTIKMKKMYGKDVRGIER
HCCEEEEECCHHHHHCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
STFLIDNKGVLRREWRGVKVPNHVDDVLTAVRAL
CEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PVTLDQPLPDFSAPATSGITFSPASQRGKIVVLYFYPKDNTPGCTTEAMNFRDQYDAFE
CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCHHHHCCHHHHHHHH
AAGAVVFGISRDSLKSHENFKAKLEMPFELISDADEAVCNIFDTIKMKKMYGKDVRGIER
HCCEEEEECCHHHHHCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
STFLIDNKGVLRREWRGVKVPNHVDDVLTAVRAL
CEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]