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The map label for this gene is arnD [H]

Identifier: 187928282

GI number: 187928282

Start: 1280075

End: 1280968

Strand: Reverse

Name: arnD [H]

Synonym: Rpic_1193

Alternate gene names: 187928282

Gene position: 1280968-1280075 (Counterclockwise)

Preceding gene: 187928283

Following gene: 187928281

Centisome position: 32.49

GC content: 64.54

Gene sequence:

>894_bases
ATGGCCCTCATCGTCCTCAAGATTGACGTCGACACCCTGCGCGGCACCCGCGAAGGCGTACCCAACCTCGCGCGCATGCT
GCGCGAGCACGAAGCTGGCGCAACCTTCCTTTTCAGCCTCGGCCCGGATCACACCGGCTGGGCGCTGCGCCGGGCCTTCC
GCCCCGGTTTCCTGAAAAAAGTCTCCCGCACGTCAGTCGTCGAGCATTACGGCTTTCGTACGCTGATGTACGGCGTGCTG
CTGCCCGGACCAGACATCGGCCGCAAAGCCGCTGCCGAAATGCGCGCCATTGGCGAAGCAGGTTTCGAGACTGGCATCCA
CACGTGGGACCACGTTCTCTGGCAGGACAACGTGCGCCAGCGCGATGCCGGCTGGACCGCGCGCCAAATGACCGCGGCTC
ACGCGCGTTTCACCCAGGTATTCGGCAAGCCTCCCGTGACGCACGGCGCTGCGGGCTGGCAGATGAACGACCACGCCTTC
CGCCAGATCGACAACTGGGGCATGGCCTACGCCTCCGACGGCCGGGGCACGCATCCGTACATCCCGAGCGTTGACGGCAA
AGCGCTGAACCACGTGCAATTGCCGACCACGCTGCCTACGCTGGACGAACTGATTGGCGTGGAAGACATCACCCTCGACA
ACGTCGCCCGGCACATCCTGAAGATGACCGAGTCCGACCGCGACCAGGTATTTACCTTGCATGCAGAACTTGAAGGGCAG
AAACTCGCCCCGATCTTCAGCGAGTTGCTGCGAGGCTGGCGCGCGCAAGGCCATCGGCTTGGGTCGATGGGCGATTACTA
CGCAACGCTCGATCGCAGTACCCTGCCCGTGCAGCCCGTCACGTGGGGCGAAGTTGCCGGCCGCAGCGGCAGCCTGATCG
TTCAACCGGCCTGA

Upstream 100 bases:

>100_bases
AAGCGTATCGCACGCACGTGGCTGAAGCCCGCAGCCTGGTCGAAGACGGCAACGGCAACAAGTAAAAGCCGCATCTCAGT
CGCACCTTCCGCGCAGGTTC

Downstream 100 bases:

>100_bases
TCCTCACGATCTCCAGTCGGGCGGCAGGCGCAGCGCCTGAGCATTGCCCGTCCACGAGCTTTCCGTCTCTTCCCCGCGGT
TTTCCGGAACACACCATGCC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MALIVLKIDVDTLRGTREGVPNLARMLREHEAGATFLFSLGPDHTGWALRRAFRPGFLKKVSRTSVVEHYGFRTLMYGVL
LPGPDIGRKAAAEMRAIGEAGFETGIHTWDHVLWQDNVRQRDAGWTARQMTAAHARFTQVFGKPPVTHGAAGWQMNDHAF
RQIDNWGMAYASDGRGTHPYIPSVDGKALNHVQLPTTLPTLDELIGVEDITLDNVARHILKMTESDRDQVFTLHAELEGQ
KLAPIFSELLRGWRAQGHRLGSMGDYYATLDRSTLPVQPVTWGEVAGRSGSLIVQPA

Sequences:

>Translated_297_residues
MALIVLKIDVDTLRGTREGVPNLARMLREHEAGATFLFSLGPDHTGWALRRAFRPGFLKKVSRTSVVEHYGFRTLMYGVL
LPGPDIGRKAAAEMRAIGEAGFETGIHTWDHVLWQDNVRQRDAGWTARQMTAAHARFTQVFGKPPVTHGAAGWQMNDHAF
RQIDNWGMAYASDGRGTHPYIPSVDGKALNHVQLPTTLPTLDELIGVEDITLDNVARHILKMTESDRDQVFTLHAELEGQ
KLAPIFSELLRGWRAQGHRLGSMGDYYATLDRSTLPVQPVTWGEVAGRSGSLIVQPA
>Mature_296_residues
ALIVLKIDVDTLRGTREGVPNLARMLREHEAGATFLFSLGPDHTGWALRRAFRPGFLKKVSRTSVVEHYGFRTLMYGVLL
PGPDIGRKAAAEMRAIGEAGFETGIHTWDHVLWQDNVRQRDAGWTARQMTAAHARFTQVFGKPPVTHGAAGWQMNDHAFR
QIDNWGMAYASDGRGTHPYIPSVDGKALNHVQLPTTLPTLDELIGVEDITLDNVARHILKMTESDRDQVFTLHAELEGQK
LAPIFSELLRGWRAQGHRLGSMGDYYATLDRSTLPVQPVTWGEVAGRSGSLIVQPA

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=300, Percent_Identity=34.3333333333333, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 32979; Mature: 32848

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIVLKIDVDTLRGTREGVPNLARMLREHEAGATFLFSLGPDHTGWALRRAFRPGFLKK
CEEEEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGFRTLMYGVLLPGPDIGRKAAAEMRAIGEAGFETGIHTWDHVLWQDNVRQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
RDAGWTARQMTAAHARFTQVFGKPPVTHGAAGWQMNDHAFRQIDNWGMAYASDGRGTHPY
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCC
IPSVDGKALNHVQLPTTLPTLDELIGVEDITLDNVARHILKMTESDRDQVFTLHAELEGQ
CCCCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCC
KLAPIFSELLRGWRAQGHRLGSMGDYYATLDRSTLPVQPVTWGEVAGRSGSLIVQPA
CHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCHHHHCCCCCCEEEECC
>Mature Secondary Structure 
ALIVLKIDVDTLRGTREGVPNLARMLREHEAGATFLFSLGPDHTGWALRRAFRPGFLKK
EEEEEEEEHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGFRTLMYGVLLPGPDIGRKAAAEMRAIGEAGFETGIHTWDHVLWQDNVRQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
RDAGWTARQMTAAHARFTQVFGKPPVTHGAAGWQMNDHAFRQIDNWGMAYASDGRGTHPY
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCC
IPSVDGKALNHVQLPTTLPTLDELIGVEDITLDNVARHILKMTESDRDQVFTLHAELEGQ
CCCCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCC
KLAPIFSELLRGWRAQGHRLGSMGDYYATLDRSTLPVQPVTWGEVAGRSGSLIVQPA
CHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA