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The map label for this gene is ydhO [H]

Identifier: 187928278

GI number: 187928278

Start: 1275886

End: 1276635

Strand: Reverse

Name: ydhO [H]

Synonym: Rpic_1189

Alternate gene names: 187928278

Gene position: 1276635-1275886 (Counterclockwise)

Preceding gene: 187928279

Following gene: 187928268

Centisome position: 32.38

GC content: 68.67

Gene sequence:

>750_bases
ATGCTCACGCGGCACAGCTTTCCCCACGGCAACATGCGACTGGCAGGCGCCGCCCTGCTGGCGCTGGTGTGCCTGCTGTC
CGCATGCTCCTCGACCCCGACCCGCTCCACCGCCTCGCGCGATACTGGCCTGCGCACGCGCGGCGCCCCGATCCAGGATC
CGAGCGCCGGTCTGGAAGAAATCTCCATCGAAGCCATGGCGCTGGTCGGCACGCCCTACCGCTACGGCGGCAATACACCC
GACAGCGGCTTCGATTGCAGCGGGCTCGTGCGCTACGTCGTGCAACGCGCTGCGTCTGTGAACCTGCCGCGTACCGCCGC
CGAAATGGGCCGCCGCGGCACCTCACTGGATCGCCGCGATGTTGCATCGGGCGACCTCGTCTTCTTCAACACGACCGGCC
AGCCGAACTCGCACGTGGGCATCTATGTCGGGCAGAACCGGTTTGTCCACGCACCGGCCACAGGCGGCACGGTGCGCCTT
GAAGACATGACCAAGTCTTATTGGGCCAACCGCTACGGGGGCGCACGCCGTGTCGTGGCCGTGAGCAACCTGCCCGATGC
ACCGGCGCCGACCATCGCCCCCATCACGCCGGCGCCCGTCAGCCCTGCCAGCCCAATCGACGATGATCCGCTCGGTACCC
TCGCCCGCACACGCGATGCTCAGGCCGACAGCCTGATGTCGACACGCGTGCCGGCGGCTGCGACGCCGCCTGCGGATGAC
GACCCCATCGCGCGCTTTGCCACGCAGTAG

Upstream 100 bases:

>100_bases
GACCCGCGCCCTGCTTGGCGTTGCGCCTCGCCAACACGCAGTTTGGCTTTCTGACGCGGCGCGCATAGCATGCTCGCTAT
CCGGACTCTCCTGATGGCCA

Downstream 100 bases:

>100_bases
CGCATCGCTCGCCCCAATGCAAAACGCCCACCGGTTTGGTGGGCGTTTCGTTTTTGCGAAGTGAATCCGAGGCCGGCTTT
GCTTACAGCACGTGTCGACC

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MLTRHSFPHGNMRLAGAALLALVCLLSACSSTPTRSTASRDTGLRTRGAPIQDPSAGLEEISIEAMALVGTPYRYGGNTP
DSGFDCSGLVRYVVQRAASVNLPRTAAEMGRRGTSLDRRDVASGDLVFFNTTGQPNSHVGIYVGQNRFVHAPATGGTVRL
EDMTKSYWANRYGGARRVVAVSNLPDAPAPTIAPITPAPVSPASPIDDDPLGTLARTRDAQADSLMSTRVPAAATPPADD
DPIARFATQ

Sequences:

>Translated_249_residues
MLTRHSFPHGNMRLAGAALLALVCLLSACSSTPTRSTASRDTGLRTRGAPIQDPSAGLEEISIEAMALVGTPYRYGGNTP
DSGFDCSGLVRYVVQRAASVNLPRTAAEMGRRGTSLDRRDVASGDLVFFNTTGQPNSHVGIYVGQNRFVHAPATGGTVRL
EDMTKSYWANRYGGARRVVAVSNLPDAPAPTIAPITPAPVSPASPIDDDPLGTLARTRDAQADSLMSTRVPAAATPPADD
DPIARFATQ
>Mature_249_residues
MLTRHSFPHGNMRLAGAALLALVCLLSACSSTPTRSTASRDTGLRTRGAPIQDPSAGLEEISIEAMALVGTPYRYGGNTP
DSGFDCSGLVRYVVQRAASVNLPRTAAEMGRRGTSLDRRDVASGDLVFFNTTGQPNSHVGIYVGQNRFVHAPATGGTVRL
EDMTKSYWANRYGGARRVVAVSNLPDAPAPTIAPITPAPVSPASPIDDDPLGTLARTRDAQADSLMSTRVPAAATPPADD
DPIARFATQ

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=117, Percent_Identity=43.5897435897436, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1786421, Length=131, Percent_Identity=38.1679389312977, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788501, Length=180, Percent_Identity=33.8888888888889, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788001, Length=124, Percent_Identity=39.5161290322581, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26174; Mature: 26174

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRHSFPHGNMRLAGAALLALVCLLSACSSTPTRSTASRDTGLRTRGAPIQDPSAGLEE
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ISIEAMALVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTAAEMGRRGTSLDRRD
HHHEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHH
VASGDLVFFNTTGQPNSHVGIYVGQNRFVHAPATGGTVRLEDMTKSYWANRYGGARRVVA
CCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHCCCCEEEEE
VSNLPDAPAPTIAPITPAPVSPASPIDDDPLGTLARTRDAQADSLMSTRVPAAATPPADD
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
DPIARFATQ
CCHHHHCCC
>Mature Secondary Structure
MLTRHSFPHGNMRLAGAALLALVCLLSACSSTPTRSTASRDTGLRTRGAPIQDPSAGLEE
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ISIEAMALVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTAAEMGRRGTSLDRRD
HHHEEEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHH
VASGDLVFFNTTGQPNSHVGIYVGQNRFVHAPATGGTVRLEDMTKSYWANRYGGARRVVA
CCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHCCCCEEEEE
VSNLPDAPAPTIAPITPAPVSPASPIDDDPLGTLARTRDAQADSLMSTRVPAAATPPADD
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
DPIARFATQ
CCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]