Click here to switch to the map view.

The map label for this gene is ctrB [H]

Identifier: 187928241

GI number: 187928241

Start: 1232060

End: 1233226

Strand: Direct

Name: ctrB [H]

Synonym: Rpic_1150

Alternate gene names: 187928241

Gene position: 1232060-1233226 (Clockwise)

Preceding gene: 187928233

Following gene: 187928242

Centisome position: 31.25

GC content: 59.04

Gene sequence:

>1167_bases
TTGGAAAATACGTTGGATACGGTACTGAGAGAAGACACGGCCGCTGAGGCGACCAGAAGCAGAAGTGGGCTTTGGCAGCG
TTTGAAACGCGTTAACCGGCTCTTTCTCGGCACTGTTGTTGTGCCAACCGCGCTCGCGACGCTCTACTTTGGCGTTGTTG
CGTCCGATATCTACGTTTCTGAGTCGCGCTTTGTGGTGCGCAGCCCGCAGCGGCAGAGCCAGAGCGGCAGCCTGAGTGCG
CTCTTGCAGGGCACCGGCTTCTCGCGGGCGCAGGATGACACCTATCCGGTGATCGATTACATCGAATCGCGCGATGCCCT
GGGCGAGCTGAACCGAAACAACTATATCCTCGACGCCTACGGCAACCACGGCGACATCCTGAGCCGGTTCCTGCGGCAGT
TCGACGATAGTTTTGAAGCGCTCTGGAAGTACTATAACAAGCGCGTGGTCACGGTGGAGTTCGACTCCACCTCCGCGATC
ACCACGCTGCAGGTGCGCTCGTTCTCCTCGCAGGATGCGATCAAGATCAATGAGTCTCTGCTGGAACTGAGTGAACACTT
GATCAACCGCATGAACGAGCGCGCCGCGAAAGACATGGTGCAGTTCGCGCGCGCCGAGGTCGATGCGGCTGCGGCCAAAG
CCAAGGATGCAGCGGCGGCGCTGGCGGCCTATCGTAAATCGAACACCGTGTTCGACCCCGACAGGCAGTCGGCCTTGCAA
TTGCAGCAGGTAACTACGCTGCAGGCGCAACTGTTCAGTGCGCAGACGCAGCTGTCCCAGCTACAAGCCATTGCGCCACA
GAATCCGCAGATTCCGGTGCTGAAAACCAATATTGCCGCAGTGGAAAAACAAATCCAGGAGGCAACGGGCGGTGTAACGG
GGGGCAAGGGTTCGCTGTCGGATAAGGCCGCCAACTACACCCGCCTTCAACTCGACTCGCAGTTTGCCGACAAACAGTTG
GCATCGGCGATGGCGGCGCTGGAGAATGCCCGCGCTGAAGCGCAGCGCAAGCAACTGTACCTGGAACGTCTGGTGCAGCC
GAATCAGCCGGATGTGGCGGTCGAACCGAAGCGGTTGAAGCGGATTTTCGAAATTTTCGCCCTGGGCATGCTGGTGTGGG
GGGTTCTCAGCTTAGTGCTTGCCGGCGTTCGCGAGCATCACGATTAA

Upstream 100 bases:

>100_bases
ACGCGCAGATAAGTCTGCGTTTATTGATGGATCGCCCGGCGTTGAGCGCGTGCTCAGCTTCAGGGTACCGGCCTGGCGCA
CTGCGTCGGGATGCACTGCA

Downstream 100 bases:

>100_bases
GGTAGAGAAGAGACCTGCATGCGACATGACACGCCATTGCTGAGATCATTCCAGATCCAGTTGCGCGTGGTGGGGGCTTT
GCTGATGCGCGAAATCCTTA

Product: WcbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MENTLDTVLREDTAAEATRSRSGLWQRLKRVNRLFLGTVVVPTALATLYFGVVASDIYVSESRFVVRSPQRQSQSGSLSA
LLQGTGFSRAQDDTYPVIDYIESRDALGELNRNNYILDAYGNHGDILSRFLRQFDDSFEALWKYYNKRVVTVEFDSTSAI
TTLQVRSFSSQDAIKINESLLELSEHLINRMNERAAKDMVQFARAEVDAAAAKAKDAAAALAAYRKSNTVFDPDRQSALQ
LQQVTTLQAQLFSAQTQLSQLQAIAPQNPQIPVLKTNIAAVEKQIQEATGGVTGGKGSLSDKAANYTRLQLDSQFADKQL
ASAMAALENARAEAQRKQLYLERLVQPNQPDVAVEPKRLKRIFEIFALGMLVWGVLSLVLAGVREHHD

Sequences:

>Translated_388_residues
MENTLDTVLREDTAAEATRSRSGLWQRLKRVNRLFLGTVVVPTALATLYFGVVASDIYVSESRFVVRSPQRQSQSGSLSA
LLQGTGFSRAQDDTYPVIDYIESRDALGELNRNNYILDAYGNHGDILSRFLRQFDDSFEALWKYYNKRVVTVEFDSTSAI
TTLQVRSFSSQDAIKINESLLELSEHLINRMNERAAKDMVQFARAEVDAAAAKAKDAAAALAAYRKSNTVFDPDRQSALQ
LQQVTTLQAQLFSAQTQLSQLQAIAPQNPQIPVLKTNIAAVEKQIQEATGGVTGGKGSLSDKAANYTRLQLDSQFADKQL
ASAMAALENARAEAQRKQLYLERLVQPNQPDVAVEPKRLKRIFEIFALGMLVWGVLSLVLAGVREHHD
>Mature_388_residues
MENTLDTVLREDTAAEATRSRSGLWQRLKRVNRLFLGTVVVPTALATLYFGVVASDIYVSESRFVVRSPQRQSQSGSLSA
LLQGTGFSRAQDDTYPVIDYIESRDALGELNRNNYILDAYGNHGDILSRFLRQFDDSFEALWKYYNKRVVTVEFDSTSAI
TTLQVRSFSSQDAIKINESLLELSEHLINRMNERAAKDMVQFARAEVDAAAAKAKDAAAALAAYRKSNTVFDPDRQSALQ
LQQVTTLQAQLFSAQTQLSQLQAIAPQNPQIPVLKTNIAAVEKQIQEATGGVTGGKGSLSDKAANYTRLQLDSQFADKQL
ASAMAALENARAEAQRKQLYLERLVQPNQPDVAVEPKRLKRIFEIFALGMLVWGVLSLVLAGVREHHD

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the CtrC and CtrD proteins [H]

COG id: COG3524

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexC/CtrB/KpsE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005705
- InterPro:   IPR003856 [H]

Pfam domain/function: PF02706 Wzz [H]

EC number: NA

Molecular weight: Translated: 43075; Mature: 43075

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTLDTVLREDTAAEATRSRSGLWQRLKRVNRLFLGTVVVPTALATLYFGVVASDIYVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
ESRFVVRSPQRQSQSGSLSALLQGTGFSRAQDDTYPVIDYIESRDALGELNRNNYILDAY
CCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
GNHGDILSRFLRQFDDSFEALWKYYNKRVVTVEFDSTSAITTLQVRSFSSQDAIKINESL
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHH
LELSEHLINRMNERAAKDMVQFARAEVDAAAAKAKDAAAALAAYRKSNTVFDPDRQSALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LQQVTTLQAQLFSAQTQLSQLQAIAPQNPQIPVLKTNIAAVEKQIQEATGGVTGGKGSLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCC
DKAANYTRLQLDSQFADKQLASAMAALENARAEAQRKQLYLERLVQPNQPDVAVEPKRLK
HHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
RIFEIFALGMLVWGVLSLVLAGVREHHD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENTLDTVLREDTAAEATRSRSGLWQRLKRVNRLFLGTVVVPTALATLYFGVVASDIYVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
ESRFVVRSPQRQSQSGSLSALLQGTGFSRAQDDTYPVIDYIESRDALGELNRNNYILDAY
CCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
GNHGDILSRFLRQFDDSFEALWKYYNKRVVTVEFDSTSAITTLQVRSFSSQDAIKINESL
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHH
LELSEHLINRMNERAAKDMVQFARAEVDAAAAKAKDAAAALAAYRKSNTVFDPDRQSALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LQQVTTLQAQLFSAQTQLSQLQAIAPQNPQIPVLKTNIAAVEKQIQEATGGVTGGKGSLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCC
DKAANYTRLQLDSQFADKQLASAMAALENARAEAQRKQLYLERLVQPNQPDVAVEPKRLK
HHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
RIFEIFALGMLVWGVLSLVLAGVREHHD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]