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The map label for this gene is rbfA

Identifier: 187928211

GI number: 187928211

Start: 1195279

End: 1195650

Strand: Direct

Name: rbfA

Synonym: Rpic_1118

Alternate gene names: 187928211

Gene position: 1195279-1195650 (Clockwise)

Preceding gene: 187928210

Following gene: 187928212

Centisome position: 30.32

GC content: 61.56

Gene sequence:

>372_bases
ATGCCGAAGAAATCGGGATCGGCCGCTGGCCGCAACGTGCGCATCGCCGATCAGATCCAGCGCGATCTGGCCGAGTTGAT
CCAGCGCGAAATCAAGAACCCGGCAATGGGCCTGGTGACGCTGCAATCCGTGACGCTCACGCCAGACTACGCGCACGCCA
AGATCTACTTCACGGTGCTGGGTGCCGAGCCGGAAGTCGCCGGCGCCATCCTGAACGAGAAGGCGGGCTACCTGCATTCG
CTGTTGTTCAAGCGCCTGCACATCCATACGGTGCCGACACTGCATTTCCACTTCGACGGTTCGGTCGAGCGCGGTATCGA
GATGTCGCGCCTGATCGATGAGGCCAACGCCACGCGTGCCAAAGACGATTGA

Upstream 100 bases:

>100_bases
GCTCGACTTTGCGACGGTGGCCCGGGCGCGTCCCGCGCCACCGTTTTGTCTTTTTGGGCCAGCCGGCGCGTGCTGTCGGC
GCCCATGTGAGGAATACTCT

Downstream 100 bases:

>100_bases
GATGGCTGAGCACCAAGTGCCCAGGCCCCAAAAGCCGCCGCGGCGTGATGTGCATGGCGTGCTGCTCCTAGACAAGCCGA
TCGGCTGGTCGAGCAACGAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MPKKSGSAAGRNVRIADQIQRDLAELIQREIKNPAMGLVTLQSVTLTPDYAHAKIYFTVLGAEPEVAGAILNEKAGYLHS
LLFKRLHIHTVPTLHFHFDGSVERGIEMSRLIDEANATRAKDD

Sequences:

>Translated_123_residues
MPKKSGSAAGRNVRIADQIQRDLAELIQREIKNPAMGLVTLQSVTLTPDYAHAKIYFTVLGAEPEVAGAILNEKAGYLHS
LLFKRLHIHTVPTLHFHFDGSVERGIEMSRLIDEANATRAKDD
>Mature_122_residues
PKKSGSAAGRNVRIADQIQRDLAELIQREIKNPAMGLVTLQSVTLTPDYAHAKIYFTVLGAEPEVAGAILNEKAGYLHSL
LFKRLHIHTVPTLHFHFDGSVERGIEMSRLIDEANATRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=39.8148148148148, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RALPJ (B2UAA4)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001898698.1
- ProteinModelPortal:   B2UAA4
- SMR:   B2UAA4
- GeneID:   6286980
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_1118
- HOGENOM:   HBG751055
- OMA:   FLRNGLF
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13618; Mature: 13487

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKSGSAAGRNVRIADQIQRDLAELIQREIKNPAMGLVTLQSVTLTPDYAHAKIYFTVL
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEE
GAEPEVAGAILNEKAGYLHSLLFKRLHIHTVPTLHFHFDGSVERGIEMSRLIDEANATRA
CCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHCCCCC
KDD
CCC
>Mature Secondary Structure 
PKKSGSAAGRNVRIADQIQRDLAELIQREIKNPAMGLVTLQSVTLTPDYAHAKIYFTVL
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEE
GAEPEVAGAILNEKAGYLHSLLFKRLHIHTVPTLHFHFDGSVERGIEMSRLIDEANATRA
CCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHCCCCC
KDD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA