| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187928145
Identifier: 187928145
GI number: 187928145
Start: 1117962
End: 1118825
Strand: Reverse
Name: 187928145
Synonym: Rpic_1052
Alternate gene names: NA
Gene position: 1118825-1117962 (Counterclockwise)
Preceding gene: 187928147
Following gene: 187928140
Centisome position: 28.38
GC content: 63.77
Gene sequence:
>864_bases ATGGGCACCGTCATCCTGACGTGGAATATCCAGTGGGGCCGTGGCGCCGACGGGCACGTCAGCCTCGCGCGCCAACTCAA GCAAGGGCGGGAGATGGCCGAATTCGACGTGTTGTGCCTGCAGGAAGTCACCTCCGGCTTCAGTGATCTGCCGGGGCAAC CAGGCGCGGACCAATGGAGCGAGCTCGCCGAGGCGCTTGGCAGCGAGTACACCGTCATCGGCGGCTTCGCGCTGGAGCGC CACAACGGCGCGCATGTGCAGCGCTTCGGCAACGCCATTGCCACCCGCCTGCCCGTGCATTACATCCAGCGCCATGCATT GCCCTGTCCGCCGGATGCCACACCGTGCATGCCGCGAATGGCCATTGAGGCGGTGGTGCAGGCGCCGTTTGGTGTCTTGC GCATCGTCACCACCCATCTGGAGTACTACTCGGAGCTGCAACGTGTGGCGCAAATCGATGCGCTGCGAGCCATCCACACG GAAGGTTGCGCGCGTGCGAATCAACCAGCCACGCTTGGCGCAGAACCCGAAGCGGGCCCTTTCCGGCCGCTCGCGCAGAC CAAGGCAACCATCATCTGCGGTGATTTCAACTGCAAAGCGGATTCCATGCCCAAGCGCTTGGCCACCGCGCCATTCGCTC GCGAACCCGCTTTGCATGATGCGTGGGAGATTGCGCACGGCGCAACGCCGCAGCCGCCGACCTTCGGTGTCTACGACCGC GCTGACTGGACTGAACCAGCCTACGCGTGCGATTTCATGCTGATTAGCGAGCCACTGAAACCGCGTGTGCTGCGCCTGGA AATCAACAGCGCTACACAGGCATCGGATCATCAACCGATGCTGCTGGCGCTGCGGAACGACTGA
Upstream 100 bases:
>100_bases AGCAGAAGAGGAAGGCGTGACGTTGGGTGCAGCTTGAGACACGAGCGAGCCTGGGCAAAATGAGGACAAGGGCGGCATTG TAAGATACCGGAGGACCAGC
Downstream 100 bases:
>100_bases AAAAGGGGAACGAAAGAGGGACAGCGGCGCCTTACAGCACCGCGTCTTTGCGTACGCCCTGAGAGGCGAAATGACGCTTT AGCTTGACCAGCGCCTCCTG
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Phosphatase; Endonuclease/Exonuclease/Phosphatase Family Protein; Phosphatase Protein; Endonuclease / Exonuclease / Phosphatase
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MGTVILTWNIQWGRGADGHVSLARQLKQGREMAEFDVLCLQEVTSGFSDLPGQPGADQWSELAEALGSEYTVIGGFALER HNGAHVQRFGNAIATRLPVHYIQRHALPCPPDATPCMPRMAIEAVVQAPFGVLRIVTTHLEYYSELQRVAQIDALRAIHT EGCARANQPATLGAEPEAGPFRPLAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDR ADWTEPAYACDFMLISEPLKPRVLRLEINSATQASDHQPMLLALRND
Sequences:
>Translated_287_residues MGTVILTWNIQWGRGADGHVSLARQLKQGREMAEFDVLCLQEVTSGFSDLPGQPGADQWSELAEALGSEYTVIGGFALER HNGAHVQRFGNAIATRLPVHYIQRHALPCPPDATPCMPRMAIEAVVQAPFGVLRIVTTHLEYYSELQRVAQIDALRAIHT EGCARANQPATLGAEPEAGPFRPLAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDR ADWTEPAYACDFMLISEPLKPRVLRLEINSATQASDHQPMLLALRND >Mature_286_residues GTVILTWNIQWGRGADGHVSLARQLKQGREMAEFDVLCLQEVTSGFSDLPGQPGADQWSELAEALGSEYTVIGGFALERH NGAHVQRFGNAIATRLPVHYIQRHALPCPPDATPCMPRMAIEAVVQAPFGVLRIVTTHLEYYSELQRVAQIDALRAIHTE GCARANQPATLGAEPEAGPFRPLAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDRA DWTEPAYACDFMLISEPLKPRVLRLEINSATQASDHQPMLLALRND
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31455; Mature: 31324
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTVILTWNIQWGRGADGHVSLARQLKQGREMAEFDVLCLQEVTSGFSDLPGQPGADQWS CCEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHH ELAEALGSEYTVIGGFALERHNGAHVQRFGNAIATRLPVHYIQRHALPCPPDATPCMPRM HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AIEAVVQAPFGVLRIVTTHLEYYSELQRVAQIDALRAIHTEGCARANQPATLGAEPEAGP HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FRPLAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDR CCCHHHCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC ADWTEPAYACDFMLISEPLKPRVLRLEINSATQASDHQPMLLALRND CCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECC >Mature Secondary Structure GTVILTWNIQWGRGADGHVSLARQLKQGREMAEFDVLCLQEVTSGFSDLPGQPGADQWS CEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHH ELAEALGSEYTVIGGFALERHNGAHVQRFGNAIATRLPVHYIQRHALPCPPDATPCMPRM HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AIEAVVQAPFGVLRIVTTHLEYYSELQRVAQIDALRAIHTEGCARANQPATLGAEPEAGP HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FRPLAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDR CCCHHHCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC ADWTEPAYACDFMLISEPLKPRVLRLEINSATQASDHQPMLLALRND CCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA