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The map label for this gene is 187927969

Identifier: 187927969

GI number: 187927969

Start: 924692

End: 925963

Strand: Reverse

Name: 187927969

Synonym: Rpic_0874

Alternate gene names: NA

Gene position: 925963-924692 (Counterclockwise)

Preceding gene: 187927970

Following gene: 187927967

Centisome position: 23.49

GC content: 62.58

Gene sequence:

>1272_bases
ATGCTTTACCAGCTTCACGAATTCCAGCGCGCCCTGCTCAGCCCCATGACAGCTTGGGCCCAAGCGACTGCCAAGACCTT
CACCAACCCACTGAGTCCGCTGTCTCTGATGCCCGGCGCACAACGCTACGCTGCGGGCTACGAGCTGCTGTACCGCCTGG
GCAAGGAGTACGAGAAGCCAGAATTCGGCATCCGCTCCGTCAAATCCAACGGCCGGGACATTCCCATCGTCGAGCAGACC
ATCGTCGAGAAGCCGTTCTGCCGCCTGATCCGCTTCAAGCGCTACGCCGACGACGCCGAGACCATCAAGCTGCTCAAGGA
TGAACCGATCGTGCTGGTGTGTGCGCCGCTTTCGGGCCACCACTCCACGCTGCTGCGCGACACCGTGCGCACGCTGTTGC
AGGATCACAAGGTGTACGTGACCGACTGGATCGACGCTCGCATGGTGCCGACCGAGGAAGGCGCCTTCCACCTGTCGGAC
TACATCAACTACATCCGCGAGTTCATCAACCACATTGGCGCCGACAAGCTGCACGTGATCTCGGTGTGCCAGCCGACCGT
GCCCGTGCTGGCCGCCATCTCGTTGATGGCCTCGGACGGCGAGAAGACGCCGCGCACGATGACCATGATGGGCGGCCCGA
TCGACGCCCGCAAGAGCCCGACCGCCGTCAACTCGCTGGCGACCAACAAGGCGCACAGCTGGTTCGAGAACAACGTGATC
TACACGGTGCCGGCCAACTATCCGGGTCATGGCCGCAAGGTGTATCCGGGCTTCCTGCAGCACGCCGGCTTCGTAGCCAT
GAACCCGGACCGCCACCTGTCATCGCACTACGATTACTACCTGAACCTGATCGAGGGTGACACGGAAGACGCTGAGGCCC
ACGTGCGCTTCTACGACGAGTACAACGCCGTGCTGGACATGGCCGCCGAGTATTACCTGGAGACCATCCGCGACGTATTT
CAGGAGTTCCACCTGGCCAACGGCACGTGGGTGGTAGAAGGCAAGCCGGTGCGTCCGCAGGACATCAAGAGCACCGCGCT
CTTCACCATCGAAGGCGAACTGGACGACATCTCCGGCAGCGGCCAGACGGAAGCAGCGCATGGCCTGTGCACCGGCATCC
CGAACGCGCGCAAGCAGCACCTGACGGCGCCCAAGTGCGGCCACTACGGCATCTTCTCGGGTCGCCGCTGGCGCGAGCAG
GTATATCCGCAGTTGCGTGATTTCATCCGCCGCTATGACGAGAATGCTCCTCGTATCAAGGCTGTCGCCTGA

Upstream 100 bases:

>100_bases
GTGCAACACTCTGTTATCAGGGTTTATGCTGCATCGCAGTACCGTGCACTCAGGTGCATAATCGTTCGCGTCGCCCTCGC
CACCACAGACCGGTCCAGCC

Downstream 100 bases:

>100_bases
CCCTGAAGCCCCCAAGAAAAAGCCTCGCAACCGCGAGGCTTTTTTGTTGTGCGATGGCGCTTCGGCCGATCAGCCCTTGG
GCCGCTCCAGATACGCCAGC

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MLYQLHEFQRALLSPMTAWAQATAKTFTNPLSPLSLMPGAQRYAAGYELLYRLGKEYEKPEFGIRSVKSNGRDIPIVEQT
IVEKPFCRLIRFKRYADDAETIKLLKDEPIVLVCAPLSGHHSTLLRDTVRTLLQDHKVYVTDWIDARMVPTEEGAFHLSD
YINYIREFINHIGADKLHVISVCQPTVPVLAAISLMASDGEKTPRTMTMMGGPIDARKSPTAVNSLATNKAHSWFENNVI
YTVPANYPGHGRKVYPGFLQHAGFVAMNPDRHLSSHYDYYLNLIEGDTEDAEAHVRFYDEYNAVLDMAAEYYLETIRDVF
QEFHLANGTWVVEGKPVRPQDIKSTALFTIEGELDDISGSGQTEAAHGLCTGIPNARKQHLTAPKCGHYGIFSGRRWREQ
VYPQLRDFIRRYDENAPRIKAVA

Sequences:

>Translated_423_residues
MLYQLHEFQRALLSPMTAWAQATAKTFTNPLSPLSLMPGAQRYAAGYELLYRLGKEYEKPEFGIRSVKSNGRDIPIVEQT
IVEKPFCRLIRFKRYADDAETIKLLKDEPIVLVCAPLSGHHSTLLRDTVRTLLQDHKVYVTDWIDARMVPTEEGAFHLSD
YINYIREFINHIGADKLHVISVCQPTVPVLAAISLMASDGEKTPRTMTMMGGPIDARKSPTAVNSLATNKAHSWFENNVI
YTVPANYPGHGRKVYPGFLQHAGFVAMNPDRHLSSHYDYYLNLIEGDTEDAEAHVRFYDEYNAVLDMAAEYYLETIRDVF
QEFHLANGTWVVEGKPVRPQDIKSTALFTIEGELDDISGSGQTEAAHGLCTGIPNARKQHLTAPKCGHYGIFSGRRWREQ
VYPQLRDFIRRYDENAPRIKAVA
>Mature_423_residues
MLYQLHEFQRALLSPMTAWAQATAKTFTNPLSPLSLMPGAQRYAAGYELLYRLGKEYEKPEFGIRSVKSNGRDIPIVEQT
IVEKPFCRLIRFKRYADDAETIKLLKDEPIVLVCAPLSGHHSTLLRDTVRTLLQDHKVYVTDWIDARMVPTEEGAFHLSD
YINYIREFINHIGADKLHVISVCQPTVPVLAAISLMASDGEKTPRTMTMMGGPIDARKSPTAVNSLATNKAHSWFENNVI
YTVPANYPGHGRKVYPGFLQHAGFVAMNPDRHLSSHYDYYLNLIEGDTEDAEAHVRFYDEYNAVLDMAAEYYLETIRDVF
QEFHLANGTWVVEGKPVRPQDIKSTALFTIEGELDDISGSGQTEAAHGLCTGIPNARKQHLTAPKCGHYGIFSGRRWREQ
VYPQLRDFIRRYDENAPRIKAVA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47922; Mature: 47922

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYQLHEFQRALLSPMTAWAQATAKTFTNPLSPLSLMPGAQRYAAGYELLYRLGKEYEKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCC
EFGIRSVKSNGRDIPIVEQTIVEKPFCRLIRFKRYADDAETIKLLKDEPIVLVCAPLSGH
CCCHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCC
HSTLLRDTVRTLLQDHKVYVTDWIDARMVPTEEGAFHLSDYINYIREFINHIGADKLHVI
HHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
SVCQPTVPVLAAISLMASDGEKTPRTMTMMGGPIDARKSPTAVNSLATNKAHSWFENNVI
EECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEE
YTVPANYPGHGRKVYPGFLQHAGFVAMNPDRHLSSHYDYYLNLIEGDTEDAEAHVRFYDE
EEECCCCCCCCCEECCHHHHHCCEEEECCCHHHHCCCCEEEEEECCCCCCCHHHEEEHHH
YNAVLDMAAEYYLETIRDVFQEFHLANGTWVVEGKPVRPQDIKSTALFTIEGELDDISGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCC
GQTEAAHGLCTGIPNARKQHLTAPKCGHYGIFSGRRWREQVYPQLRDFIRRYDENAPRIK
CCCHHHCHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEE
AVA
ECC
>Mature Secondary Structure
MLYQLHEFQRALLSPMTAWAQATAKTFTNPLSPLSLMPGAQRYAAGYELLYRLGKEYEKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCC
EFGIRSVKSNGRDIPIVEQTIVEKPFCRLIRFKRYADDAETIKLLKDEPIVLVCAPLSGH
CCCHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCC
HSTLLRDTVRTLLQDHKVYVTDWIDARMVPTEEGAFHLSDYINYIREFINHIGADKLHVI
HHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
SVCQPTVPVLAAISLMASDGEKTPRTMTMMGGPIDARKSPTAVNSLATNKAHSWFENNVI
EECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEE
YTVPANYPGHGRKVYPGFLQHAGFVAMNPDRHLSSHYDYYLNLIEGDTEDAEAHVRFYDE
EEECCCCCCCCCEECCHHHHHCCEEEECCCHHHHCCCCEEEEEECCCCCCCHHHEEEHHH
YNAVLDMAAEYYLETIRDVFQEFHLANGTWVVEGKPVRPQDIKSTALFTIEGELDDISGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCC
GQTEAAHGLCTGIPNARKQHLTAPKCGHYGIFSGRRWREQVYPQLRDFIRRYDENAPRIK
CCCHHHCHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEE
AVA
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA