Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 187927866

GI number: 187927866

Start: 813941

End: 814597

Strand: Reverse

Name: ompA [H]

Synonym: Rpic_0770

Alternate gene names: 187927866

Gene position: 814597-813941 (Counterclockwise)

Preceding gene: 187927884

Following gene: 187927864

Centisome position: 20.66

GC content: 61.04

Gene sequence:

>657_bases
ATGAAAAAATTTGCCAAGCTCGCGTTCGCTGCAGCTGCGGTAGCCATGGCTGCGTCCGCTTACGCTCAGTCGGTGCCCTA
CGAAAAGAAGGCCGTCAACGACAACTGGGGTAACGGCACGAGCGAGTGGGTCTGGAAGAACGGCACGAACGAACTGTGCT
GGCGCAATGGCTTCTGGACGCCGGCAACCGCCAACGCTCAGTGCGACGGCGCTCTGGCTCCGGCTGCTGCTCCGACCGCT
GCTCCGGCTGCTCCGGCTGCTCCGGTTGTGTCGAGCGAAAAGGTTACGTTCGCTGCTGACACCCTGTTCGATTTCGACAA
GGCTGTGCTGAAGCCGGAAGGCAAGGCCAAGCTGGACGACCTGGTCTCGAAGCTGAATGGTATCAACCTGGAAGTCGTGA
TCGCCGTTGGCCACACCGACTCGTTCGGTTCGGACAAGTACAACGACCGCCTGTCGGTCCGTCGTGCTGAAGCCGTCAAG
GGCTACCTGGTCAGCAAGGGCATCGAAGCCAACCGTGTCTACACGGAAGGCAAGGGCAAGCGTCAGCTGAAGGTTGATCC
GAAGTCGTGCAAGGGCGCTCGCAAGGCACAAATCGCCTGCCAGCAACCGAACCGCCGCGTGGACGTCGAAGTGGTCGGCA
CCCGCAAGGCTCAGTAA

Upstream 100 bases:

>100_bases
TTCACCACACCGAGAATGTTATACTCCGAAGAATGTATGACTTGTTTTCGTCCCATCTGCTCGCAGTCTTCTGCGGTGAT
CTCATCCTGAGAGGAGAAAT

Downstream 100 bases:

>100_bases
TTCGGTTCACACCGGAAAAAAGCCCAGCTGTCGCTGGGCTTTTTTTCGCCTGTACATCTGCGTCGCCGGACGCCTTCCCC
GAGGCCGCTGCGGAAATAGG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWVWKNGTNELCWRNGFWTPATANAQCDGALAPAAAPTA
APAAPAAPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVK
GYLVSKGIEANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ

Sequences:

>Translated_218_residues
MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWVWKNGTNELCWRNGFWTPATANAQCDGALAPAAAPTA
APAAPAAPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVK
GYLVSKGIEANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ
>Mature_218_residues
MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWVWKNGTNELCWRNGFWTPATANAQCDGALAPAAAPTA
APAAPAAPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVK
GYLVSKGIEANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=130, Percent_Identity=43.0769230769231, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23317; Mature: 23317

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWVWKNGTNELCWRNGFWT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAQCDGALAPAAAPTAAPAAPAAPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHH
LVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVKGYLVSKGIEANRVYTEGKGK
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ
EEEEECHHHHCCCCCEEEEECCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKKFAKLAFAAAAVAMAASAYAQSVPYEKKAVNDNWGNGTSEWVWKNGTNELCWRNGFWT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAQCDGALAPAAAPTAAPAAPAAPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHH
LVSKLNGINLEVVIAVGHTDSFGSDKYNDRLSVRRAEAVKGYLVSKGIEANRVYTEGKGK
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RQLKVDPKSCKGARKAQIACQQPNRRVDVEVVGTRKAQ
EEEEECHHHHCCCCCEEEEECCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]