| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187927854
Identifier: 187927854
GI number: 187927854
Start: 796644
End: 799100
Strand: Direct
Name: 187927854
Synonym: Rpic_0758
Alternate gene names: NA
Gene position: 796644-799100 (Clockwise)
Preceding gene: 187927852
Following gene: 187927855
Centisome position: 20.21
GC content: 66.22
Gene sequence:
>2457_bases ATGCGCCTGCATTTCCTTCTTGCCGCCGTGCTGTCCGTGGCGTTGCCTGCTCAAGCCGAGCTTCTCATCAGCGAGTACGT AGAAGGCAGCTCGAACAACAAGGCCATCGAAATCTACAACCCGGACGGCGCCGAAGCCGATCTGTCGGTCTACAAGATCG AGCAGTACAACAATGGCGCCAGCACGCCCACCGCGTCGTTTGCGCTCTCGGGCAAGCTGGCGCCAGGCGCCGTCCATGTG ATGGCCCACAGCACACTGGCCAGCGTGCTCGGCAGCCGCGTCAACCAGACCGCGGCGTTCTCCTTCAACGGCGACGATGC GCTGAGACTGACGCGCTCCGGCGTTGTTGTCGACCGCATCGGCCAGGTTGGCTATCAACCGCCGTCCGGCTTCTGGGGTA CAGCCAGCGCCGGCACCAAGGACCACACGCTGCGCCGCCAAGGCACGGTGAAGGCGGGCGACACGGACAGCACAGCTGCC TTCAATCCATCCCTTCAGTGGGATGCCTTCAATATCGACGACTTCTCCGACCTTGGCCTGTACAACGGGCAGGGCACCGT CACGCCACCACCCGCCGTTGCGATGTGCGGCGCGCCGGCAACGCACCTTGCCGATGTGCAGGGCGCCGGGGCCACTTCGC CGCTGGTCGGCCTGAACGTCGAGATCGAAGCCGTCGTGACCGCCGACTATAGTGGCGCCACCGGCTTTAACGGCTTCTTC GTGCAACAACCCGACGCGCAGCGCCGCCGGTTGTCTGGCGTGTCGGAAGGCCTGTTCGTCTATGCGCCCGGCGTCAGCGC CCGCGCTGGTGACCTCGTCCACCTGGTCGGCAAGGTGGACGAGAGGTACGGCCAGACGCAACTGACGCTGGCCACCGGCG GCATCGCAAGCTGTGCCAGCGGCAACCGCGTGACGCCGGTCGACGTGACATTGCCCGTGGCCGATGCCAAGGCGTTGTCG GCGTATGAAGGGATGCTCGTGCGCCTGCCGCAGACGCTGACGGTGAGCGAAACGTACGAGCTTGGGCGCTACGGCAGCGT CCTGCTCAGCAACGGACGCCTGCCACTGCCGACAAACGTGGCTCCGCCCGCGCATGGCGCAGCCGCGCAGGCCGCGGCCA ATGCGCTGAACCGCATCGTGCTCGACGATGGCTCCAATCAGCAGAATCCCGCCAGCGTGCGCTATCCAGCGCCCGGCTTG TCGGCAACCAACCCCGTGCGTGCGGGCTATACGGTGAGCGGTGTACAAGGCGTGCTGGAAATGCGCTACAACGCCTGGCG CCTGCAGCCCGTGCCGGGCGCGGCTGCACCGGTTTTCAATGCCGCCGCGAACCCGCGTGCCGGTGCACCTGTGCGCCACG CGCAGGCGGATGTGCGCGTGGCTTCGTTCAACGTACTGAACTACTTCAACGGAGACGGCAAAGGCGCCGGCTTTGACGAT CCGGCCAATCGAGGTGCCAAGACACAGGCCGAGTTCGAACGCCAGGAAGCCAAGATCGTCGCCGCCATCCGCGCCCTCAA TGCCGACGTGGTCGGCCTGATGGAAATCGAGAACGACGGCTACGGCGACCTCAGCGCCATCCGCCGCCTGACAAGCCAGC TCGGGGCCGACTGGCGCTATGTCGATCCTGGCGTGCCGAAGCTCGGCGGTGACGCGATCACGGTAGCCATCGTCTACAAC AGCCGCACCGTGGAGCCCGTGGGGGCGCCGGCCACGCTGGCGATCGACAACAGGAACCGCCAGCCGCTGGCGCGCAGCTT CCGGCGCATTGGCGACACGCAGAACTTCACCGTGGTCGTCAATCACCTGAAGTCCAAGGGCTGTTCTGGTGCGACCGGCA AGGACGCCGACCAGGGCGACGGCCAGAGCTGCTGGAACCCAACCCGCGTACGTGCTGCCGGCCTGATCGCCGACTGGCTG GCGACCTCACCGACCGGCGTGGCCGATGTGGGCCAGCTCCTCATTGGTGATCTCAACAGCTATGCCAAGGAAGACCCCGT CGTGCTGTTCGCCCAGAAGGGGTATGCCGACATGGTGGCGAAGTTCGTCGGCAAGGATGCGTACAGCTATGTCTACGGCG GCGAATCCGGCTACATCGATCACGCGCTCGCCACCCCTGGCTTGGCAGAGCGCGTGCGTGCCGTACATGAGTGGCATATC AATGCCGACGAGCCGATCGCGCTCGAATACGCGTTCGGCCACAAGAGCGCAGAGCAACAACAAACGTTCTACGCACCGGA CGCGTACCGCTCGTCGGATCATGACCCGGTGCTGGTCGACCTCGCCCTCAATACGCAGACCGCAGGTGGCGGCACGAGCC CGGAAGGCGATGCGGCGGCGGGTGCGGCTACGGGCAGCACAGGGGTGGGGGGTGCCGGTGCGGTGGACCCGATTCTCGGG CTCGTACTGGCCGCCGCTGCGGTAGCCTTGGCGCGGCGTCGTGCGTGTCGGTCTTGA
Upstream 100 bases:
>100_bases TACAGAATGCTGAACGATCGGTGACGGCACGCCATGCGTGCGTCATCGGCGTTGCTGAGGGTATGCCGAAATCCTTTTAT TCCCCAACTCCCCCGTCCCC
Downstream 100 bases:
>100_bases GCGTCTGCGCTCTTCCTCGGGCGACGCGCGGCAGCTCCATCGCCAGTCGAATCGCATCCATGCGTTCGTTGACCGTTCGA CACAGCCTTAAGGTCGTTTC
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; Endonuclease I; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Endonuclease/Exonuclease/PhosphataseEndonuclease I; Outer Membrane Adhesin Like Proteiin; Extracellular Ribonuclease; LPXTG-Motif Cell Wall Anchor Domain Protein; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; DNA/RNA Non-Specific Endonuclease; Extracellular Nuclease/Phosphatase; 50S Ribosomal Type B; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGAEADLSVYKIEQYNNGASTPTASFALSGKLAPGAVHV MAHSTLASVLGSRVNQTAAFSFNGDDALRLTRSGVVVDRIGQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAA FNPSLQWDAFNIDDFSDLGLYNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGLNVEIEAVVTADYSGATGFNGFF VQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLVGKVDERYGQTQLTLATGGIASCASGNRVTPVDVTLPVADAKALS AYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNVAPPAHGAAAQAAANALNRIVLDDGSNQQNPASVRYPAPGL SATNPVRAGYTVSGVQGVLEMRYNAWRLQPVPGAAAPVFNAAANPRAGAPVRHAQADVRVASFNVLNYFNGDGKGAGFDD PANRGAKTQAEFERQEAKIVAAIRALNADVVGLMEIENDGYGDLSAIRRLTSQLGADWRYVDPGVPKLGGDAITVAIVYN SRTVEPVGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVVNHLKSKGCSGATGKDADQGDGQSCWNPTRVRAAGLIADWL ATSPTGVADVGQLLIGDLNSYAKEDPVVLFAQKGYADMVAKFVGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHI NADEPIALEYAFGHKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAAGAATGSTGVGGAGAVDPILG LVLAAAAVALARRRACRS
Sequences:
>Translated_818_residues MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGAEADLSVYKIEQYNNGASTPTASFALSGKLAPGAVHV MAHSTLASVLGSRVNQTAAFSFNGDDALRLTRSGVVVDRIGQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAA FNPSLQWDAFNIDDFSDLGLYNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGLNVEIEAVVTADYSGATGFNGFF VQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLVGKVDERYGQTQLTLATGGIASCASGNRVTPVDVTLPVADAKALS AYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNVAPPAHGAAAQAAANALNRIVLDDGSNQQNPASVRYPAPGL SATNPVRAGYTVSGVQGVLEMRYNAWRLQPVPGAAAPVFNAAANPRAGAPVRHAQADVRVASFNVLNYFNGDGKGAGFDD PANRGAKTQAEFERQEAKIVAAIRALNADVVGLMEIENDGYGDLSAIRRLTSQLGADWRYVDPGVPKLGGDAITVAIVYN SRTVEPVGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVVNHLKSKGCSGATGKDADQGDGQSCWNPTRVRAAGLIADWL ATSPTGVADVGQLLIGDLNSYAKEDPVVLFAQKGYADMVAKFVGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHI NADEPIALEYAFGHKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAAGAATGSTGVGGAGAVDPILG LVLAAAAVALARRRACRS >Mature_818_residues MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGAEADLSVYKIEQYNNGASTPTASFALSGKLAPGAVHV MAHSTLASVLGSRVNQTAAFSFNGDDALRLTRSGVVVDRIGQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAA FNPSLQWDAFNIDDFSDLGLYNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGLNVEIEAVVTADYSGATGFNGFF VQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLVGKVDERYGQTQLTLATGGIASCASGNRVTPVDVTLPVADAKALS AYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNVAPPAHGAAAQAAANALNRIVLDDGSNQQNPASVRYPAPGL SATNPVRAGYTVSGVQGVLEMRYNAWRLQPVPGAAAPVFNAAANPRAGAPVRHAQADVRVASFNVLNYFNGDGKGAGFDD PANRGAKTQAEFERQEAKIVAAIRALNADVVGLMEIENDGYGDLSAIRRLTSQLGADWRYVDPGVPKLGGDAITVAIVYN SRTVEPVGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVVNHLKSKGCSGATGKDADQGDGQSCWNPTRVRAAGLIADWL ATSPTGVADVGQLLIGDLNSYAKEDPVVLFAQKGYADMVAKFVGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHI NADEPIALEYAFGHKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAAGAATGSTGVGGAGAVDPILG LVLAAAAVALARRRACRS
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85199; Mature: 85199
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGAEADLSVYKIEQYNNGA CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCC STPTASFALSGKLAPGAVHVMAHSTLASVLGSRVNQTAAFSFNGDDALRLTRSGVVVDRI CCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHH GQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAAFNPSLQWDAFNIDDFSDLGL HHCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCCEEECCCCEEEEECCCCHHHCCE YNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGLNVEIEAVVTADYSGATGFNGFF ECCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCEEECCEEEEEEEEECCCCCCCCCCEE VQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLVGKVDERYGQTQLTLATGGIASCAS EECCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHCCC GNRVTPVDVTLPVADAKALSAYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNV CCCCCEEEEEEECCCHHHHHHHCCEEEECCCEEEEHHHHHCCCCCEEEEECCCCCCCCCC APPAHGAAAQAAANALNRIVLDDGSNQQNPASVRYPAPGLSATNPVRAGYTVSGVQGVLE CCCCCCHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEHHHHHHHHH MRYNAWRLQPVPGAAAPVFNAAANPRAGAPVRHAQADVRVASFNVLNYFNGDGKGAGFDD HCCCCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHCCEEEEEEEEEEEECCCCCCCCCCC PANRGAKTQAEFERQEAKIVAAIRALNADVVGLMEIENDGYGDLSAIRRLTSQLGADWRY CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEE VDPGVPKLGGDAITVAIVYNSRTVEPVGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVV ECCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEE NHLKSKGCSGATGKDADQGDGQSCWNPTRVRAAGLIADWLATSPTGVADVGQLLIGDLNS EEHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH YAKEDPVVLFAQKGYADMVAKFVGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHI HCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHCCC NADEPIALEYAFGHKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAA CCCCCEEEEEECCCCCCHHHHEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC GAATGSTGVGGAGAVDPILGLVLAAAAVALARRRACRS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRLHFLLAAVLSVALPAQAELLISEYVEGSSNNKAIEIYNPDGAEADLSVYKIEQYNNGA CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCC STPTASFALSGKLAPGAVHVMAHSTLASVLGSRVNQTAAFSFNGDDALRLTRSGVVVDRI CCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHH GQVGYQPPSGFWGTASAGTKDHTLRRQGTVKAGDTDSTAAFNPSLQWDAFNIDDFSDLGL HHCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCCEEECCCCEEEEECCCCHHHCCE YNGQGTVTPPPAVAMCGAPATHLADVQGAGATSPLVGLNVEIEAVVTADYSGATGFNGFF ECCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCEEECCEEEEEEEEECCCCCCCCCCEE VQQPDAQRRRLSGVSEGLFVYAPGVSARAGDLVHLVGKVDERYGQTQLTLATGGIASCAS EECCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHCCC GNRVTPVDVTLPVADAKALSAYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNV CCCCCEEEEEEECCCHHHHHHHCCEEEECCCEEEEHHHHHCCCCCEEEEECCCCCCCCCC APPAHGAAAQAAANALNRIVLDDGSNQQNPASVRYPAPGLSATNPVRAGYTVSGVQGVLE CCCCCCHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEHHHHHHHHH MRYNAWRLQPVPGAAAPVFNAAANPRAGAPVRHAQADVRVASFNVLNYFNGDGKGAGFDD HCCCCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHCCEEEEEEEEEEEECCCCCCCCCCC PANRGAKTQAEFERQEAKIVAAIRALNADVVGLMEIENDGYGDLSAIRRLTSQLGADWRY CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEE VDPGVPKLGGDAITVAIVYNSRTVEPVGAPATLAIDNRNRQPLARSFRRIGDTQNFTVVV ECCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEE NHLKSKGCSGATGKDADQGDGQSCWNPTRVRAAGLIADWLATSPTGVADVGQLLIGDLNS EEHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH YAKEDPVVLFAQKGYADMVAKFVGKDAYSYVYGGESGYIDHALATPGLAERVRAVHEWHI HCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHCCC NADEPIALEYAFGHKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQTAGGGTSPEGDAAA CCCCCEEEEEECCCCCCHHHHEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC GAATGSTGVGGAGAVDPILGLVLAAAAVALARRRACRS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA