Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 187927844

GI number: 187927844

Start: 788107

End: 788865

Strand: Reverse

Name: ybbK [C]

Synonym: Rpic_0748

Alternate gene names: 187927844

Gene position: 788865-788107 (Counterclockwise)

Preceding gene: 187927845

Following gene: 187927839

Centisome position: 20.01

GC content: 63.77

Gene sequence:

>759_bases
ATGCTTTACGGCTTCTTCAGCGCAGGCGGCCTGATCTTCCTGGCCGTGCTGCTGGTCATCTCGTCGTTCCGGGTGCTGCG
CGAATACGAGCGCGGCGTGGTGTTTCTGCTGGGCCGCTTCTGGCGCGTGAAGGGGCCGGGGCTGGTGCTGATCGTGCCGG
CGATCCAGCAAATGGTGCGCGTGGATCTGCGCACGGTGGTGATGGACGTGCCGCCGCAGGATGTGATCTCGCACGACAAC
GTGTCGGTCAAGGTCAATGCGGTGGTGTACTTCCGGGTGGTCGATCCGGAGCGCGCCATCATCCAGGTGGCCAACTATCT
GGAAGCGACCAGCCAGCTCGCCCAGACGACGCTGCGGGCCATCCTGGGCAAACACGAGCTGGACGAGATGCTGGCCGAGC
GCGAAAAGCTCAACCTCGACATCCAGAAGGTGCTCGACATCCAGACCGACCCGTGGGGCATCAAGATCGCGAACGTGGAG
ATCAAACACGTCGACCTGAACGAATCGATGATCCGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAACGCCGCGCCAA
GGTCATCCACGCAGAAGGCGAACTGCAGGCATCGGAAAAGCTGCTCGAAGCTGCACGCATGCTGGCCCAGCAGCCCGAGG
CGATCCAGTTGCGCTATCTCCAGACGCTCACGCAGATTGCGGGCGACAGAAGCTCGACGATTGTCTTCCCGCTGCCGATG
GAAGTGCTGGGCGCGGTAAAGAAAGCCGCCGGCGGCTGA

Upstream 100 bases:

>100_bases
TCGCGCGTGGCGATCAGGTGCGTGTGATCGCCCGGCGTGGGCTGACACTGATGGTGGAACCCGTTGCCCCCCTCGCCGCG
TCTTCATAAGGAGAAGAAAA

Downstream 100 bases:

>100_bases
CCCGCATCACAGATCGATCTTCATGCCGAGCTTGAACAGCCGCGGCGCCCCCATCGACAGACGGTTGTTGCCGGCGCCCG
CCCAGTAGCGCTTGTCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTVVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANYLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDRSSTIVFPLPM
EVLGAVKKAAGG

Sequences:

>Translated_252_residues
MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTVVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANYLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDRSSTIVFPLPM
EVLGAVKKAAGG
>Mature_252_residues
MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVRVDLRTVVMDVPPQDVISHDN
VSVKVNAVVYFRVVDPERAIIQVANYLEATSQLAQTTLRAILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVE
IKHVDLNESMIRAIARQAEAERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDRSSTIVFPLPM
EVLGAVKKAAGG

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=250, Percent_Identity=46.8, Blast_Score=206, Evalue=1e-53,
Organism=Homo sapiens, GI21686995, Length=250, Percent_Identity=46.8, Blast_Score=206, Evalue=1e-53,
Organism=Homo sapiens, GI38016911, Length=244, Percent_Identity=45.4918032786885, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI7657615, Length=250, Percent_Identity=34, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI7305503, Length=190, Percent_Identity=35.7894736842105, Blast_Score=120, Evalue=8e-28,
Organism=Homo sapiens, GI20149563, Length=166, Percent_Identity=36.144578313253, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI38016907, Length=60, Percent_Identity=56.6666666666667, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1786697, Length=188, Percent_Identity=36.7021276595745, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1790616, Length=202, Percent_Identity=27.2277227722772, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569493, Length=244, Percent_Identity=47.9508196721311, Blast_Score=225, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=48.3333333333333, Blast_Score=221, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI71987612, Length=238, Percent_Identity=47.8991596638655, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI25153583, Length=238, Percent_Identity=47.8991596638655, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=247, Percent_Identity=45.3441295546559, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI71987621, Length=238, Percent_Identity=47.8991596638655, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17570459, Length=258, Percent_Identity=46.1240310077519, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=248, Percent_Identity=42.3387096774194, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI71989948, Length=221, Percent_Identity=49.3212669683258, Blast_Score=190, Evalue=6e-49,
Organism=Caenorhabditis elegans, GI17570161, Length=255, Percent_Identity=45.0980392156863, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=255, Percent_Identity=45.0980392156863, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI32566490, Length=235, Percent_Identity=45.531914893617, Blast_Score=178, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=178, Percent_Identity=47.752808988764, Blast_Score=145, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI71989963, Length=116, Percent_Identity=47.4137931034483, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=36.3095238095238, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542664, Length=152, Percent_Identity=25.6578947368421, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45556022, Length=227, Percent_Identity=51.9823788546256, Blast_Score=220, Evalue=6e-58,
Organism=Drosophila melanogaster, GI18860517, Length=240, Percent_Identity=47.9166666666667, Blast_Score=206, Evalue=1e-53,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=49.7942386831276, Blast_Score=200, Evalue=9e-52,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=49.7942386831276, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24657857, Length=243, Percent_Identity=49.7942386831276, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI62484274, Length=243, Percent_Identity=49.7942386831276, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI21356845, Length=234, Percent_Identity=39.7435897435897, Blast_Score=183, Evalue=8e-47,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=39.1666666666667, Blast_Score=181, Evalue=6e-46,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=39.1666666666667, Blast_Score=181, Evalue=6e-46,
Organism=Drosophila melanogaster, GI28573263, Length=245, Percent_Identity=40, Blast_Score=179, Evalue=1e-45,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=41.4364640883978, Blast_Score=146, Evalue=1e-35,
Organism=Drosophila melanogaster, GI45550506, Length=188, Percent_Identity=36.7021276595745, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28174; Mature: 28174

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHH
VDLRTVVMDVPPQDVISHDNVSVKVNAVVYFRVVDPERAIIQVANYLEATSQLAQTTLRA
HHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVEIKHVDLNESMIRAIARQAEA
HHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
ERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDRSSTIVFPLPM
HHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
EVLGAVKKAAGG
HHHHHHHHHCCC
>Mature Secondary Structure
MLYGFFSAGGLIFLAVLLVISSFRVLREYERGVVFLLGRFWRVKGPGLVLIVPAIQQMVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHH
VDLRTVVMDVPPQDVISHDNVSVKVNAVVYFRVVDPERAIIQVANYLEATSQLAQTTLRA
HHHHHHHCCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
ILGKHELDEMLAEREKLNLDIQKVLDIQTDPWGIKIANVEIKHVDLNESMIRAIARQAEA
HHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHH
ERERRAKVIHAEGELQASEKLLEAARMLAQQPEAIQLRYLQTLTQIAGDRSSTIVFPLPM
HHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
EVLGAVKKAAGG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]