Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 187927839

GI number: 187927839

Start: 779099

End: 780319

Strand: Reverse

Name: yfdE [H]

Synonym: Rpic_0743

Alternate gene names: 187927839

Gene position: 780319-779099 (Counterclockwise)

Preceding gene: 187927844

Following gene: 187927838

Centisome position: 19.79

GC content: 67.9

Gene sequence:

>1221_bases
ATGGGCGCTCTGAGCCATCTCCGTGTTCTCGACCTGACCCGCGTACTTGCCGGCCCCTGGTGCGCACAGAACCTCGCCGA
TTTCGGCGCCGACGTCATCAAGGTGGAGCGTCCGGGCGCCGGCGACGACACGCGCACCTGGGGCCCGCCGTGGCTCAAGG
ACGAAGCCGGCCAGGACACCGCCGAGGCCGCCTACTACCTGGCCGCCAACCGCAACAAGCGCTCGATCACGGTCGACATC
AGCACGCCCGAGGGCCAGGACATCGTCCGCCAGCTCGCCGCGCACGCCGATGTGGTGCTCGAGAACTACAAGGTCGGCCA
GCTCGCGAAATACGGGCTCGACTACGCATCGATCAAGGCCGTGAAGCCAGACGTCGTCTACTGCTCCATCACGGGCTTCG
GCCAGACCGGTCCTTACGCCGCCCGCGCCGGCTATGACTTCATCGTGCAAGGCATGGGCGGCTTCATGAGCCTGACCGGC
GAGCGCGACGACCTGCCCGGCGGCGGCCCGCAAAAGGCCGGCGTGGCCATCTCGGATTTGATGACCGGCATGTACGCCAC
CGTGGCCGTGCTCGCCGCGCTCGCGCACCGGGACCGCACGGGCGAAGGCCAGTACATCGACATGGCGTTGCTCGACGTGC
AGGTCGCCATGCTGGCCAACATGAACACCAACTACCTCGCCAGCGGCCAGGCGCCCAAGCGCTGGGGCAATGCGCATCCG
AACATCGTGCCGTATCAGACGTTCCAGGCGGCCAACGGCTGGATCATCGTGGCAGTCGGCAACGACGGGCAGTTCCGGCG
CTTTGTGGATGCGGGCGGCATGCCCGAGCTGGCCGACGACCCGCGCTTTGCCACCAACCCGCAGCGCGTGGCCAACCGGG
ACGTGCTGGTGCCGATCCTGGCCGAGATGGTCAAGCGCTTGAGCAAAGGCGAATGGATCGACAAGCTCGAAGCCGCCGGT
GTGCCGTGCGGCCCGATCAATTCGCTCGACGAGGTGTTCAACAACGAGCAGGTGCAGGCGCGCGGCCTGCGCGTCGACCT
GCCTCACCCCAGCGCCGGCACCGTCAAGCTTGTCGGCAGCCCCGTCAAGATGAGCGCCACGCCGCCCAAGGCCGCGAGCC
ACCCGCCGCTGCTGGGCGAACACACCGAGGCTGTGCTGCGCGACGTGCTGAACCTGAACAGGGAGCAGATCGAAACGCTG
CGCGCGCGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
GGTTGCTAATGTGTTAGCGCCCATTCGTCGCATGGGGCTGGGGGTACCCCGGAGCGTGGTGTAGAGTGCACCCGTTCCAA
TCGTGTCGATTCGTCAATCC

Downstream 100 bases:

>100_bases
GCCCTGCAATCCACGCCAACCCTTCCCCACCCTGATGAGGTCAACATGTGGCTTGATGCGTTGCTGGCTTACCTGCATTA
CATCTCGATCTTCACGCTGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRTWGPPWLKDEAGQDTAEAAYYLAANRNKRSITVDI
STPEGQDIVRQLAAHADVVLENYKVGQLAKYGLDYASIKAVKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTG
ERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYLASGQAPKRWGNAHP
NIVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPELADDPRFATNPQRVANRDVLVPILAEMVKRLSKGEWIDKLEAAG
VPCGPINSLDEVFNNEQVQARGLRVDLPHPSAGTVKLVGSPVKMSATPPKAASHPPLLGEHTEAVLRDVLNLNREQIETL
RARGVI

Sequences:

>Translated_406_residues
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRTWGPPWLKDEAGQDTAEAAYYLAANRNKRSITVDI
STPEGQDIVRQLAAHADVVLENYKVGQLAKYGLDYASIKAVKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTG
ERDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYLASGQAPKRWGNAHP
NIVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPELADDPRFATNPQRVANRDVLVPILAEMVKRLSKGEWIDKLEAAG
VPCGPINSLDEVFNNEQVQARGLRVDLPHPSAGTVKLVGSPVKMSATPPKAASHPPLLGEHTEAVLRDVLNLNREQIETL
RARGVI
>Mature_405_residues
GALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRTWGPPWLKDEAGQDTAEAAYYLAANRNKRSITVDIS
TPEGQDIVRQLAAHADVVLENYKVGQLAKYGLDYASIKAVKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTGE
RDDLPGGGPQKAGVAISDLMTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYLASGQAPKRWGNAHPN
IVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPELADDPRFATNPQRVANRDVLVPILAEMVKRLSKGEWIDKLEAAGV
PCGPINSLDEVFNNEQVQARGLRVDLPHPSAGTVKLVGSPVKMSATPPKAASHPPLLGEHTEAVLRDVLNLNREQIETLR
ARGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=45.1612903225806, Blast_Score=367, Evalue=1e-102,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=42.4242424242424, Blast_Score=353, Evalue=1e-97,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=39.7022332506204, Blast_Score=306, Evalue=2e-83,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=38.9277389277389, Blast_Score=305, Evalue=7e-83,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=25.0614250614251, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=24.6305418719212, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=28.2051282051282, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=28.2051282051282, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=30.6748466257669, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=30.6748466257669, Blast_Score=90, Evalue=5e-18,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=32.4742268041237, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1788717, Length=435, Percent_Identity=32.8735632183908, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1786222, Length=413, Percent_Identity=23.0024213075061, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=23.6151603498542, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=353, Percent_Identity=22.6628895184136, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=45.1612903225806, Blast_Score=355, Evalue=2e-98,
Organism=Drosophila melanogaster, GI24585488, Length=344, Percent_Identity=24.4186046511628, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43621; Mature: 43490

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRTWGPPWLKDEAGQDT
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSITVDISTPEGQDIVRQLAAHADVVLENYKVGQLAKYGLDYASIKA
HHHEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHEEE
VKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTGERDDLPGGGPQKAGVAISDL
CCCCEEEEEEECCCCCCCCHHHCCCHHHEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
MTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYLASGQAPKRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCHHCCCCCC
NIVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPELADDPRFATNPQRVANRDVLVPIL
CCCCCHHEECCCCEEEEEECCCCCEEHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
AEMVKRLSKGEWIDKLEAAGVPCGPINSLDEVFNNEQVQARGLRVDLPHPSAGTVKLVGS
HHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHCCCCEEECCCEEECCCCCCCEEEEECC
PVKMSATPPKAASHPPLLGEHTEAVLRDVLNLNREQIETLRARGVI
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GALSHLRVLDLTRVLAGPWCAQNLADFGADVIKVERPGAGDDTRTWGPPWLKDEAGQDT
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
AEAAYYLAANRNKRSITVDISTPEGQDIVRQLAAHADVVLENYKVGQLAKYGLDYASIKA
HHHEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHEEE
VKPDVVYCSITGFGQTGPYAARAGYDFIVQGMGGFMSLTGERDDLPGGGPQKAGVAISDL
CCCCEEEEEEECCCCCCCCHHHCCCHHHEECCCCEEEECCCCCCCCCCCCCCCCEEHHHH
MTGMYATVAVLAALAHRDRTGEGQYIDMALLDVQVAMLANMNTNYLASGQAPKRWGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCHHCCCCCC
NIVPYQTFQAANGWIIVAVGNDGQFRRFVDAGGMPELADDPRFATNPQRVANRDVLVPIL
CCCCCHHEECCCCEEEEEECCCCCEEHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
AEMVKRLSKGEWIDKLEAAGVPCGPINSLDEVFNNEQVQARGLRVDLPHPSAGTVKLVGS
HHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHCCCCEEECCCEEECCCCCCCEEEEECC
PVKMSATPPKAASHPPLLGEHTEAVLRDVLNLNREQIETLRARGVI
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]