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The map label for this gene is ygdL [H]

Identifier: 187927818

GI number: 187927818

Start: 758472

End: 759374

Strand: Direct

Name: ygdL [H]

Synonym: Rpic_0722

Alternate gene names: 187927818

Gene position: 758472-759374 (Clockwise)

Preceding gene: 187927816

Following gene: 187927823

Centisome position: 19.24

GC content: 66.0

Gene sequence:

>903_bases
ATGAGCCAAGTAGCAATCAGCGCGCCCGCGCACCCGCCCATCCTCGATGATGAATATGCACGCCGGTTTGGCGGTGTTGC
CCGGCTGTATGGTCCGCAGGCGCTTGAGCGGTTTGCGGCGGCGCATGTGTGCGTCATCGGCATCGGTGGGGTGGGGTCGT
GGGTGGCTGAAGCGGTGGCGCGTTGCGGTGTCGGCAAGTTCACGCTGATCGACCTCGATCACATCGCCGTGTCCAACACC
AACCGCCAGATCCACGCGCTGGGCGACGCGTATGGCGTGGCCAAGGTCGACGCCATGGCAGAGCGCATTCTCCAGATCAA
TCCGCGCGCCGAAATCAGCCGCATCGACGATTTCGTGACTGTCGAAAACGTCGAGGCATTGCTCGGCCACCCGTTCGACT
ACGTGATCGACGCCATTGACGCTGTGAAGGTGAAGACGGCGATCATCGCGTTCTGCAAACGCACCGGCAAACGCGTCGTG
ACGTGCGGCGCCGCGGGTGGGCAATTGGACCCGACGCGCATTCGCGTGACGGACCTGTCGCGCACCATTCAAGACCCGCT
GCTGGCGAAGGTGCGCGGCAACCTGCGCCGCCAGCATGGCTTCTCGAAGAACCCGAAGTCGCGCTTCGGTATTGACGCGG
TGTTCTCCGACGAGCCGCTGCGCTACCCCGAACCCGAGCAGCAGGCGTGCGCCGTTGAGTTACCAGTCGAGTCGAGCCAC
GCCGGCATCGACGACCTTGCGGCGGCGGGTGACATTGCCGTGGTCAACGCGCCGCCCGCGCCGCAGCCTGCGCAGGGGCC
GCAAGGCCTGGCGTGCGCGGGGTTCGGTTCGTCCGTATGCGTGACGGCGGTGTTCGGAATGGTGGCCGCGTCAACGGCGC
TGCGCGCGATCGCCGGTGTGTGA

Upstream 100 bases:

>100_bases
GTTTGCCGGATGTACGCATCGTCCTTTTGTTGGTATTGGCACAAAAATGCGACCGCGCGCGTTGATATATAGTTCGGCGC
AACCACGATTCAATTGTGTC

Downstream 100 bases:

>100_bases
CGGCGTGCTGCCTTATCGCGGGATGACCTGATCCAGCTTCTCGCGGATGGTGTCGGCGTACACGCCCGACCACCCGTCTC
GCGGCTGGCTGTTGGCAAAG

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVCVIGIGGVGSWVAEAVARCGVGKFTLIDLDHIAVSNT
NRQIHALGDAYGVAKVDAMAERILQINPRAEISRIDDFVTVENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVV
TCGAAGGQLDPTRIRVTDLSRTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDEPLRYPEPEQQACAVELPVESSH
AGIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFGSSVCVTAVFGMVAASTALRAIAGV

Sequences:

>Translated_300_residues
MSQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVCVIGIGGVGSWVAEAVARCGVGKFTLIDLDHIAVSNT
NRQIHALGDAYGVAKVDAMAERILQINPRAEISRIDDFVTVENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVV
TCGAAGGQLDPTRIRVTDLSRTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDEPLRYPEPEQQACAVELPVESSH
AGIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFGSSVCVTAVFGMVAASTALRAIAGV
>Mature_299_residues
SQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVCVIGIGGVGSWVAEAVARCGVGKFTLIDLDHIAVSNTN
RQIHALGDAYGVAKVDAMAERILQINPRAEISRIDDFVTVENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVVT
CGAAGGQLDPTRIRVTDLSRTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDEPLRYPEPEQQACAVELPVESSHA
GIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFGSSVCVTAVFGMVAASTALRAIAGV

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=285, Percent_Identity=49.1228070175439, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI1787048, Length=140, Percent_Identity=27.8571428571429, Blast_Score=62, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322825, Length=244, Percent_Identity=31.9672131147541, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321790, Length=217, Percent_Identity=28.110599078341, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 31553; Mature: 31422

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00819 DPS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVCVIGIGGVGSWVAEAVA
CCCEEECCCCCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHEEEEEEECCHHHHHHHHHH
RCGVGKFTLIDLDHIAVSNTNRQIHALGDAYGVAKVDAMAERILQINPRAEISRIDDFVT
HCCCCCEEEEEECCEEECCCCCEEEECCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVVTCGAAGGQLDPTRIRVTDLS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEHHHH
RTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDEPLRYPEPEQQACAVELPVESSH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCC
AGIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFGSSVCVTAVFGMVAASTALRAIAGV
CCHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQVAISAPAHPPILDDEYARRFGGVARLYGPQALERFAAAHVCVIGIGGVGSWVAEAVA
CCEEECCCCCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHEEEEEEECCHHHHHHHHHH
RCGVGKFTLIDLDHIAVSNTNRQIHALGDAYGVAKVDAMAERILQINPRAEISRIDDFVT
HCCCCCEEEEEECCEEECCCCCEEEECCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VENVEALLGHPFDYVIDAIDAVKVKTAIIAFCKRTGKRVVTCGAAGGQLDPTRIRVTDLS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEHHHH
RTIQDPLLAKVRGNLRRQHGFSKNPKSRFGIDAVFSDEPLRYPEPEQQACAVELPVESSH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCC
AGIDDLAAAGDIAVVNAPPAPQPAQGPQGLACAGFGSSVCVTAVFGMVAASTALRAIAGV
CCHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]