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The map label for this gene is yqgF [C]

Identifier: 187927716

GI number: 187927716

Start: 661272

End: 661703

Strand: Direct

Name: yqgF [C]

Synonym: Rpic_0620

Alternate gene names: 187927716

Gene position: 661272-661703 (Clockwise)

Preceding gene: 187927715

Following gene: 187927717

Centisome position: 16.77

GC content: 63.19

Gene sequence:

>432_bases
ATGCCTGAGCCGGCACGTCCGGCCACCGCTTCCGTGCCTGTGGAAGGCACCTTGCTGGCATTCGATTACGGCGAAAAACG
CATCGGCGTGGCGCTGGGCAATACGGTTTCGCGCTCGGCGCGGGCGCTGGAAACCATTCCGAACCGTTCGGTCGATTTCC
GCTTCGCGCAGATAAGCCGGCTGGTCGGCGAATGGCAGCCTGTGGGCTTCGTGGTCGGCATGCCCGTCCATCCCGATGGC
GAAGAGCAGCCGATGATCAAGCTCGCCAAGCGCTTCGGCAATCAATTGCTCGGCCGCTATGGCCTGCCGGTCACCTGGGT
GGACGAGCGCTATTCGTCGATCGCCGCACAGGATGCCGGTGCCTCCGACGATGTGCTCGACGCAGAAGCCGCGCGCATCA
TCCTCCAACAGTTTTTCGACGAACACGCATGA

Upstream 100 bases:

>100_bases
GATCCCGAGATCATCTTCAACGTGCCCCCCGAAGAGCGGTTTGCCGCGGCGCTGAACCTGCTCGGCATCAACCCCGCCAT
GCTGTCGGGTGAGGCCGGGC

Downstream 100 bases:

>100_bases
CATCGCAACAGATCGATGCCGAGGCGCTGTACCAGAGCCTCGTTGCACAACTGCGCACGCGGCTGGCCGACGGCCACACC
TGGTCGGTGGCCGGCATTGT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MPEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPDG
EEQPMIKLAKRFGNQLLGRYGLPVTWVDERYSSIAAQDAGASDDVLDAEAARIILQQFFDEHA

Sequences:

>Translated_143_residues
MPEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPDG
EEQPMIKLAKRFGNQLLGRYGLPVTWVDERYSSIAAQDAGASDDVLDAEAARIILQQFFDEHA
>Mature_142_residues
PEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISRLVGEWQPVGFVVGMPVHPDGE
EQPMIKLAKRFGNQLLGRYGLPVTWVDERYSSIAAQDAGASDDVLDAEAARIILQQFFDEHA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=136, Percent_Identity=37.5, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RALPJ (B2U7A9)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001898203.1
- GeneID:   6288480
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_0620
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15639; Mature: 15508

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISR
CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHH
LVGEWQPVGFVVGMPVHPDGEEQPMIKLAKRFGNQLLGRYGLPVTWVDERYSSIAAQDAG
HHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCC
ASDDVLDAEAARIILQQFFDEHA
CCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PEPARPATASVPVEGTLLAFDYGEKRIGVALGNTVSRSARALETIPNRSVDFRFAQISR
CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHH
LVGEWQPVGFVVGMPVHPDGEEQPMIKLAKRFGNQLLGRYGLPVTWVDERYSSIAAQDAG
HHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCC
ASDDVLDAEAARIILQQFFDEHA
CCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA