| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187927694
Identifier: 187927694
GI number: 187927694
Start: 632221
End: 633492
Strand: Direct
Name: 187927694
Synonym: Rpic_0598
Alternate gene names: NA
Gene position: 632221-633492 (Clockwise)
Preceding gene: 187927681
Following gene: 187927695
Centisome position: 16.04
GC content: 64.23
Gene sequence:
>1272_bases ATGAGCCAGAGATCTGTGCGTCTGCCAGCCACGCGCAGCGCCGCAGCAGCAATTCGTGCAACCGTTGAGCATGCTGCTGG CCACTGGATCGATCTGGCCCGAGTGCGCGCCTACAGCGGTGCGCTGCTGGTTCTGTTCTGCGTGCTGCTGCTTGGCTGGG CCTGGACGAGCAATGGCTTTACCGATGTGACGATGGCGCGTCCTGGAACGGATTTCTCGGCGTTCTGGGGCGCCTCCTAT CTCGCGCTGACGCAGGGCCCTCTGCAGGCATACGACGTGCGCCAGCTGACTGCGGTGATCGCCGAGCATGGAACGTTGGG AAGGGGGGCTGAGCTGATCCTTCCCTGGCTCTATCCGCCGACCTTTCTGCTGATGGTCTTGCCGCTGTCGTTGTTGCCGC TGACCTTGAGCTACCTGCTGTTCCTGGCCGGCACGGGGCTCGTCTATTTCAAATCAATCGGCATGTTGACGGGGGCACAG CACCCCTGGCGCCAGGGGTTGTGGTTGCCTGTGCTGGCCGCTCCGGCAACGCTTATCACCATTCTCGCTGGCCAAAACTC GCTGTTGACAGCTGGTGTGGCCGGGGCTGCCGTGTATCACCTGAACAAGCGCCCCGTGCTTGCCGGTGTGCTGATCGGCT TGCTTGCCATCAAGCCGCAACTGGCGGTGTTGTTCCCGCTGGCCCTGGTGATCTCGCGTGCATGGAAGGCGCTGGCCAGC GCGCTGCTGACAACCGTGGTGTTTGCGAGTGTCAGCGTGTTGGTCTGCGGCTGGCGCACGGTGCCGGCGTTCCTTGCCAA CGCGCAATGGGTGCGGGCGAGCTTCATCGAGGGCGGCGCCAACCTATGGTGGGGCATGCCAACGCCTATCGCAGCCGCCC GGCTGGCCGGGGCGAGCGTGACCGGTGCGTACGCCGTACAGGTGTTGACAGCGCTGGCGATGGCCGCCGCGATGGCCTAT GTCTGGCGGCGGACGACGGCGTTTGAGTTACGTGCTGCGGCGCTGGCGATTGCCACGCTGATGGTGTCGCCATATCTGCG TGACTACGAGTTGACATGGCTGGGACTGGCCATTGCCGGGTTGGTAGGGGACGGTGTGCGTGATGACAGTGCCAATGGCC TGTCGAGCGGCGATCGTGCGCTGCTCGTTGTCGCCTGGCTACTGCCGCTCTATGAGCACGCCAATCCTTACCTGAAGCTG CCGCAGTTTGGGCCGGCGGTTCTGATTGCCATGATGGCGCTTGTTGTGCGGCGCGTGGCAACGCGGGCGTGA
Upstream 100 bases:
>100_bases CGCCCGCGGCGTGAAGCTGTCGCGCGCGTGACGAAGCCCCACTCAGCGCAGCGCAGACATCGTGTGCCGCGCACCACCCG GAACCGACGCGAGGAGCAGC
Downstream 100 bases:
>100_bases GGGCACCATGGCCGTCGCCTTGAACCTTCTAAAGCACAGGGCGCCCGAGGCTACGACGGCGCCCCCAGAAACCGCACCAG GTGCTCGCCACTGGTTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MSQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLVLFCVLLLGWAWTSNGFTDVTMARPGTDFSAFWGASY LALTQGPLQAYDVRQLTAVIAEHGTLGRGAELILPWLYPPTFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQ HPWRQGLWLPVLAAPATLITILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIKPQLAVLFPLALVISRAWKALAS ALLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFIEGGANLWWGMPTPIAAARLAGASVTGAYAVQVLTALAMAAAMAY VWRRTTAFELRAAALAIATLMVSPYLRDYELTWLGLAIAGLVGDGVRDDSANGLSSGDRALLVVAWLLPLYEHANPYLKL PQFGPAVLIAMMALVVRRVATRA
Sequences:
>Translated_423_residues MSQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLVLFCVLLLGWAWTSNGFTDVTMARPGTDFSAFWGASY LALTQGPLQAYDVRQLTAVIAEHGTLGRGAELILPWLYPPTFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQ HPWRQGLWLPVLAAPATLITILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIKPQLAVLFPLALVISRAWKALAS ALLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFIEGGANLWWGMPTPIAAARLAGASVTGAYAVQVLTALAMAAAMAY VWRRTTAFELRAAALAIATLMVSPYLRDYELTWLGLAIAGLVGDGVRDDSANGLSSGDRALLVVAWLLPLYEHANPYLKL PQFGPAVLIAMMALVVRRVATRA >Mature_422_residues SQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLVLFCVLLLGWAWTSNGFTDVTMARPGTDFSAFWGASYL ALTQGPLQAYDVRQLTAVIAEHGTLGRGAELILPWLYPPTFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQH PWRQGLWLPVLAAPATLITILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIKPQLAVLFPLALVISRAWKALASA LLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFIEGGANLWWGMPTPIAAARLAGASVTGAYAVQVLTALAMAAAMAYV WRRTTAFELRAAALAIATLMVSPYLRDYELTWLGLAIAGLVGDGVRDDSANGLSSGDRALLVVAWLLPLYEHANPYLKLP QFGPAVLIAMMALVVRRVATRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45075; Mature: 44944
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLVLFCVLLLGWAWTSNGF CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC TDVTMARPGTDFSAFWGASYLALTQGPLQAYDVRQLTAVIAEHGTLGRGAELILPWLYPP EEEEEECCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCH TFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQHPWRQGLWLPVLAAPATLIT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHH ILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIKPQLAVLFPLALVISRAWKALAS HHCCCCCEEEHHHHHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFIEGGANLWWGMPTPIAAARLAGASV HHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCC TGAYAVQVLTALAMAAAMAYVWRRTTAFELRAAALAIATLMVSPYLRDYELTWLGLAIAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LVGDGVRDDSANGLSSGDRALLVVAWLLPLYEHANPYLKLPQFGPAVLIAMMALVVRRVA HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHH TRA HCC >Mature Secondary Structure SQRSVRLPATRSAAAAIRATVEHAAGHWIDLARVRAYSGALLVLFCVLLLGWAWTSNGF CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC TDVTMARPGTDFSAFWGASYLALTQGPLQAYDVRQLTAVIAEHGTLGRGAELILPWLYPP EEEEEECCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCH TFLLMVLPLSLLPLTLSYLLFLAGTGLVYFKSIGMLTGAQHPWRQGLWLPVLAAPATLIT HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHH ILAGQNSLLTAGVAGAAVYHLNKRPVLAGVLIGLLAIKPQLAVLFPLALVISRAWKALAS HHCCCCCEEEHHHHHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALLTTVVFASVSVLVCGWRTVPAFLANAQWVRASFIEGGANLWWGMPTPIAAARLAGASV HHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCC TGAYAVQVLTALAMAAAMAYVWRRTTAFELRAAALAIATLMVSPYLRDYELTWLGLAIAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LVGDGVRDDSANGLSSGDRALLVVAWLLPLYEHANPYLKLPQFGPAVLIAMMALVVRRVA HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHH TRA HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA