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The map label for this gene is agaC [H]

Identifier: 187935290

GI number: 187935290

Start: 3242240

End: 3243007

Strand: Reverse

Name: agaC [H]

Synonym: CLL_A3132

Alternate gene names: 187935290

Gene position: 3243007-3242240 (Counterclockwise)

Preceding gene: 187934310

Following gene: 187933169

Centisome position: 85.33

GC content: 33.2

Gene sequence:

>768_bases
ATGTTTGTTAAAGCTTTATTAATTGCTATTTGGGCAGGTATTGCAGGTATCGATTTATATGATGGATTACTTCATATACA
CAGGCCAATAGTAACGGGACTTGTAGTAGGTTTAATTTTAGGAGATGTAAAAACAGGACTTATAGTTGGAGCCGCATTAG
AACTTGTATTTATGGGGATGGTTCCACTTGCAGGAGCACAACCTCCTAATGTAGTTATTGGAGGTATTATTGGAACAAGT
ATAGCTATTTTAGGTAAATTAGAACCACAAGCAGCAGTAGGTGTGGCAATACCATTTGCTGTAGCTGTACAAGCTGCTAT
AACATTTATTTTTACATTATTTTCATTCTTTATGCACAAGGCAGATAAGTATGCAGAAAATGCAGATACAAAAGGTATAG
ATAGAATTAATTATATGGGAATGCTTTGCTTGTTTATATTCTACTTTGTAATTGCATTTTTACCAATATTCTTTGGTGCA
GACAAAGCAGCAGAGATTGTAAGAGCAGTGCCTGAATGGATTATTAATGGATTAAAAGTAGCAGGTGGAGTAATGCCAGC
AATTGGATTTGCAATGTTATTAAAAATCATGTTAAAGAAAGAATACATGGCATTTCTTATTATCGGTTTCTTATTTGTAA
CATACGGTCATATTTCAATTTTAGGATTAGCTTTAGTTGGCTTAAGTATAGCATTATATGATTATTATTCAGCTAGTAAT
AAGAAAGTAGCAAAAGTTGCAGAGGAGGAATATGAAGATGGAATCTAA

Upstream 100 bases:

>100_bases
CTGATGAAGCAATAGATGAAGATATTTATAAACACATATAAATCCATAAATTTAAAAATATTTTTATTATCAAAAAATAT
ATTAATGAAGGAGGAACATT

Downstream 100 bases:

>100_bases
TGTAGCATATAAAGAACCTACCCCTAAAAAGGTAATTACTAATAAAGATTTAAATCATATGGTTTGGCGTTCACTTTTTT
TACAAGCATCTTTTAACTAT

Product: PTS system sorbose-specific iic component

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MFVKALLIAIWAGIAGIDLYDGLLHIHRPIVTGLVVGLILGDVKTGLIVGAALELVFMGMVPLAGAQPPNVVIGGIIGTS
IAILGKLEPQAAVGVAIPFAVAVQAAITFIFTLFSFFMHKADKYAENADTKGIDRINYMGMLCLFIFYFVIAFLPIFFGA
DKAAEIVRAVPEWIINGLKVAGGVMPAIGFAMLLKIMLKKEYMAFLIIGFLFVTYGHISILGLALVGLSIALYDYYSASN
KKVAKVAEEEYEDGI

Sequences:

>Translated_255_residues
MFVKALLIAIWAGIAGIDLYDGLLHIHRPIVTGLVVGLILGDVKTGLIVGAALELVFMGMVPLAGAQPPNVVIGGIIGTS
IAILGKLEPQAAVGVAIPFAVAVQAAITFIFTLFSFFMHKADKYAENADTKGIDRINYMGMLCLFIFYFVIAFLPIFFGA
DKAAEIVRAVPEWIINGLKVAGGVMPAIGFAMLLKIMLKKEYMAFLIIGFLFVTYGHISILGLALVGLSIALYDYYSASN
KKVAKVAEEEYEDGI
>Mature_255_residues
MFVKALLIAIWAGIAGIDLYDGLLHIHRPIVTGLVVGLILGDVKTGLIVGAALELVFMGMVPLAGAQPPNVVIGGIIGTS
IAILGKLEPQAAVGVAIPFAVAVQAAITFIFTLFSFFMHKADKYAENADTKGIDRINYMGMLCLFIFYFVIAFLPIFFGA
DKAAEIVRAVPEWIINGLKVAGGVMPAIGFAMLLKIMLKKEYMAFLIIGFLFVTYGHISILGLALVGLSIALYDYYSASN
KKVAKVAEEEYEDGI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=248, Percent_Identity=40.3225806451613, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1788121, Length=247, Percent_Identity=29.9595141700405, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 27353; Mature: 27353

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]