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The map label for this gene is nusB [H]

Identifier: 187935150

GI number: 187935150

Start: 2497574

End: 2497975

Strand: Reverse

Name: nusB [H]

Synonym: CLL_A2406

Alternate gene names: 187935150

Gene position: 2497975-2497574 (Counterclockwise)

Preceding gene: 187934125

Following gene: 187935746

Centisome position: 65.73

GC content: 24.13

Gene sequence:

>402_bases
ATGAATAGAAAACTATCAAGAGAAAAAGCAATGGAATTATTATTTGGGATGACATTAAACACTGATAATTGTGAGGAAAC
ATTAGAAAACTTTATAGACAATTATGAAAGTGACATAAAAGAATTAGATATAACATACATAAAGAGAATATTAATAGGGG
TAGAAAATAACAAAGATAACATAGATGAATCTATATCAAAGAATTTATGTAATTGGAAGATAGATAGAATATCAAAGGTT
AACTTATGTATATTAAGATTAGCAGTATATGAATTATTACATGATGAAGAAATTCCAAACAGAGTTGCAATAAACGAAGC
ATTGGAAATAACAAAGAAATATTCAGATGAAAAAAGTGTTTCATTTGTAAATGGAGTTTTAGATAACATTTTAAAAAAAT
AA

Upstream 100 bases:

>100_bases
TGAATTTCAGAGGGTGTTTCCATGCTAGATATTATTTGGAGAATAACTTTCAACAAAAATGACAAGAATTAAGAAGAATT
TAAAGTACGTGGAGGATCAG

Downstream 100 bases:

>100_bases
ATTATAAGGGGCGAAAATAAAAATGGGGCAAATTATAAATGGAAAAGAAGTAGCATTAAAGATAAAAGAAGAAATAAAGA
CCTTTGTTGAAGAAAGAAAA

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNRKLSREKAMELLFGMTLNTDNCEETLENFIDNYESDIKELDITYIKRILIGVENNKDNIDESISKNLCNWKIDRISKV
NLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEKSVSFVNGVLDNILKK

Sequences:

>Translated_133_residues
MNRKLSREKAMELLFGMTLNTDNCEETLENFIDNYESDIKELDITYIKRILIGVENNKDNIDESISKNLCNWKIDRISKV
NLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEKSVSFVNGVLDNILKK
>Mature_133_residues
MNRKLSREKAMELLFGMTLNTDNCEETLENFIDNYESDIKELDITYIKRILIGVENNKDNIDESISKNLCNWKIDRISKV
NLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEKSVSFVNGVLDNILKK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=121, Percent_Identity=33.8842975206612, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15498; Mature: 15498

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKLSREKAMELLFGMTLNTDNCEETLENFIDNYESDIKELDITYIKRILIGVENNKDN
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IDESISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEKSV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
SFVNGVLDNILKK
HHHHHHHHHHHCC
>Mature Secondary Structure
MNRKLSREKAMELLFGMTLNTDNCEETLENFIDNYESDIKELDITYIKRILIGVENNKDN
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IDESISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEKSV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
SFVNGVLDNILKK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA