| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is 187934959
Identifier: 187934959
GI number: 187934959
Start: 3067062
End: 3068558
Strand: Reverse
Name: 187934959
Synonym: CLL_A2980
Alternate gene names: NA
Gene position: 3068558-3067062 (Counterclockwise)
Preceding gene: 187933413
Following gene: 187933031
Centisome position: 80.74
GC content: 30.79
Gene sequence:
>1497_bases ATGAATGAAAAACGGGATCAATGGGGTAGCAAATTGGGATTTATTATTTCCGCTATAGGTTCAGCAGTAGGCTTAGGTAA TATATGGAGATTTCCATATGTGGCATATTCTAATGGTGGAGGAGCATTTTTAATTCCTTACTTTTTCGCTATTTTTACTG CAGGTATACCATTATTAATATTAGAATATGGAATGGGGCATAAATATAAAGGATCAACACCACTTGCAATGGCAAGAGCA AAGAAAAAATGGGAATGGCTTGGTTGGTGGCCTACAATTAGTGCATTTATTATACTATGCTATTATTCAATGATTTTAAG TTGGGCTATTAATTATTTAAGATTTAGTTTTACTAGGGGCTGGGGAAATGATTCAAATTCATTTTTCCATAATGATTTTT TACATTTAACTTCATCACCATTCGATTTTGGTGGTATAGTTTGGCCTATATTTATAGGAATTGCTATTATTTGGTTAATT AATTGGACTATTTGTTATAAAGGAATAAAAGGTGGAATAGAAAAAGTAAATAAAGTTTTATTACCAATGTTAATAATAAT TATGGTTGTAATAGCTATTAGAGGAGTAACACTAGAAGGTGCATCATTAGGATTAAACACATTGTTTACACCGGATTGGT CAAAAGTGTTAGATCCTAAAGTTTGGGTAGCTGCATATGGACAAGTATTCTTTTCATTAAGTTTAGCAATGGGAATAATG ATAACATACTCAAGTTATTTGCCTAAGAAAACTGATATTAATAATAGTGCATTTATGACAGCTTTTGCAAACTGTGGCTT TGAATTTTTGTGTGCTATAGCAGTCTTTGGAATATTAGGATATATGGCTAATGTTCAAGGGGTACCTGTGTCAGAAGTTG TTTCAAGTGGAGTTGGTCTTGCTTTTGTAGTATTCCCAGAAGTATTTAGTGCTATGGGAAGTTGGGGAACTATTTTAGGC ATTTTATTTTTTGCATGTTTAATATTTGCAGGTATTACATCTACGGTTTCATTAACGGAAGCAGTATCAGCACCATTTGT AGATAAATTTGAATGGAAACGTAACAAAGTAATAACAGTATTTTGTTTAATAGGTTTTTCAATAAGTGCAGCTTTCGCAA GTGGAGCAGGATTATATCTATTAGATATAATAGATAATTTTATTAATAATTATGGAATAGTAGTTGTTGGATTATTAGAA GTAACTTTAGTAGGGTGGATATTAAAACCATATACAATAAGAGAGCATACTAATGAGATATCATATTTCAGAATAGGAAA ATGGTGGGATGTAACAGTTAAATATGTAACACCAGCAATATTGATATTTATGTTGATACAGAGTTTAATTACAGAAATTA AATCTCCATATGGTGGATATCCTTTATCAGCATTATTTATGTATGGATGGAGTGTAATATTAATAGGAATAGTGTCAGCA ATTATTATTACTAAAAGACCTTGGAAGAATAAGAAGATGAGTAATTTTGATAATTAA
Upstream 100 bases:
>100_bases ATATTTTTAAATGAATATTGAAAATATTATTAAATTGGTATATCATATTAATAATTAAGAGATGATTTTATTTATCATAT CTACAAAGGGGGAAGTGGAC
Downstream 100 bases:
>100_bases TAGAAGATATATAGGAGGAATTTTTAATGAACAGTATAGCAATAACTTTCTTTAGCTTAGGAGCAATAGTTTTATGGGGC GGCTTAGTGTTAACATTAGG
Product: sodium/proline symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MNEKRDQWGSKLGFIISAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKYKGSTPLAMARA KKKWEWLGWWPTISAFIILCYYSMILSWAINYLRFSFTRGWGNDSNSFFHNDFLHLTSSPFDFGGIVWPIFIGIAIIWLI NWTICYKGIKGGIEKVNKVLLPMLIIIMVVIAIRGVTLEGASLGLNTLFTPDWSKVLDPKVWVAAYGQVFFSLSLAMGIM ITYSSYLPKKTDINNSAFMTAFANCGFEFLCAIAVFGILGYMANVQGVPVSEVVSSGVGLAFVVFPEVFSAMGSWGTILG ILFFACLIFAGITSTVSLTEAVSAPFVDKFEWKRNKVITVFCLIGFSISAAFASGAGLYLLDIIDNFINNYGIVVVGLLE VTLVGWILKPYTIREHTNEISYFRIGKWWDVTVKYVTPAILIFMLIQSLITEIKSPYGGYPLSALFMYGWSVILIGIVSA IIITKRPWKNKKMSNFDN
Sequences:
>Translated_498_residues MNEKRDQWGSKLGFIISAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKYKGSTPLAMARA KKKWEWLGWWPTISAFIILCYYSMILSWAINYLRFSFTRGWGNDSNSFFHNDFLHLTSSPFDFGGIVWPIFIGIAIIWLI NWTICYKGIKGGIEKVNKVLLPMLIIIMVVIAIRGVTLEGASLGLNTLFTPDWSKVLDPKVWVAAYGQVFFSLSLAMGIM ITYSSYLPKKTDINNSAFMTAFANCGFEFLCAIAVFGILGYMANVQGVPVSEVVSSGVGLAFVVFPEVFSAMGSWGTILG ILFFACLIFAGITSTVSLTEAVSAPFVDKFEWKRNKVITVFCLIGFSISAAFASGAGLYLLDIIDNFINNYGIVVVGLLE VTLVGWILKPYTIREHTNEISYFRIGKWWDVTVKYVTPAILIFMLIQSLITEIKSPYGGYPLSALFMYGWSVILIGIVSA IIITKRPWKNKKMSNFDN >Mature_498_residues MNEKRDQWGSKLGFIISAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLILEYGMGHKYKGSTPLAMARA KKKWEWLGWWPTISAFIILCYYSMILSWAINYLRFSFTRGWGNDSNSFFHNDFLHLTSSPFDFGGIVWPIFIGIAIIWLI NWTICYKGIKGGIEKVNKVLLPMLIIIMVVIAIRGVTLEGASLGLNTLFTPDWSKVLDPKVWVAAYGQVFFSLSLAMGIM ITYSSYLPKKTDINNSAFMTAFANCGFEFLCAIAVFGILGYMANVQGVPVSEVVSSGVGLAFVVFPEVFSAMGSWGTILG ILFFACLIFAGITSTVSLTEAVSAPFVDKFEWKRNKVITVFCLIGFSISAAFASGAGLYLLDIIDNFINNYGIVVVGLLE VTLVGWILKPYTIREHTNEISYFRIGKWWDVTVKYVTPAILIFMLIQSLITEIKSPYGGYPLSALFMYGWSVILIGIVSA IIITKRPWKNKKMSNFDN
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI4507043, Length=525, Percent_Identity=31.047619047619, Blast_Score=217, Evalue=2e-56, Organism=Homo sapiens, GI289191377, Length=501, Percent_Identity=29.7405189620758, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI289191351, Length=501, Percent_Identity=29.7405189620758, Blast_Score=216, Evalue=4e-56, Organism=Homo sapiens, GI4557046, Length=501, Percent_Identity=29.7405189620758, Blast_Score=216, Evalue=4e-56, Organism=Homo sapiens, GI7657587, Length=492, Percent_Identity=29.2682926829268, Blast_Score=209, Evalue=3e-54, Organism=Homo sapiens, GI21361581, Length=490, Percent_Identity=28.1632653061224, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI92859670, Length=523, Percent_Identity=28.8718929254302, Blast_Score=202, Evalue=4e-52, Organism=Homo sapiens, GI188528618, Length=488, Percent_Identity=29.0983606557377, Blast_Score=202, Evalue=6e-52, Organism=Homo sapiens, GI4507041, Length=497, Percent_Identity=27.5653923541247, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI134304856, Length=527, Percent_Identity=29.9810246679317, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI171184408, Length=491, Percent_Identity=29.1242362525458, Blast_Score=194, Evalue=1e-49, Organism=Homo sapiens, GI171184406, Length=491, Percent_Identity=29.1242362525458, Blast_Score=194, Evalue=1e-49, Organism=Homo sapiens, GI171184404, Length=491, Percent_Identity=29.1242362525458, Blast_Score=194, Evalue=1e-49, Organism=Homo sapiens, GI67782317, Length=526, Percent_Identity=28.5171102661597, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI67782313, Length=526, Percent_Identity=28.5171102661597, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI67782315, Length=526, Percent_Identity=28.5171102661597, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI194018524, Length=525, Percent_Identity=28.952380952381, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI197276623, Length=525, Percent_Identity=27.4285714285714, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI54607094, Length=525, Percent_Identity=27.4285714285714, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI51468073, Length=537, Percent_Identity=25.512104283054, Blast_Score=173, Evalue=3e-43, Organism=Homo sapiens, GI11181770, Length=545, Percent_Identity=25.8715596330275, Blast_Score=162, Evalue=1e-39, Organism=Homo sapiens, GI5032097, Length=493, Percent_Identity=26.7748478701826, Blast_Score=156, Evalue=3e-38, Organism=Homo sapiens, GI58219014, Length=308, Percent_Identity=31.8181818181818, Blast_Score=153, Evalue=3e-37, Organism=Homo sapiens, GI289191353, Length=358, Percent_Identity=29.0502793296089, Blast_Score=149, Evalue=6e-36, Organism=Homo sapiens, GI218563756, Length=493, Percent_Identity=26.5720081135903, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI33354281, Length=312, Percent_Identity=30.4487179487179, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI6005715, Length=351, Percent_Identity=31.0541310541311, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI300360519, Length=336, Percent_Identity=26.4880952380952, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI12408638, Length=540, Percent_Identity=23.1481481481481, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI218563758, Length=332, Percent_Identity=24.6987951807229, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI21361693, Length=119, Percent_Identity=34.453781512605, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI197276625, Length=126, Percent_Identity=38.0952380952381, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI55749589, Length=316, Percent_Identity=25.9493670886076, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI226437581, Length=258, Percent_Identity=26.7441860465116, Blast_Score=83, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17555248, Length=536, Percent_Identity=29.2910447761194, Blast_Score=224, Evalue=8e-59, Organism=Caenorhabditis elegans, GI133952791, Length=547, Percent_Identity=28.5191956124314, Blast_Score=196, Evalue=2e-50, Organism=Caenorhabditis elegans, GI25146584, Length=499, Percent_Identity=28.4569138276553, Blast_Score=191, Evalue=1e-48, Organism=Caenorhabditis elegans, GI17535731, Length=551, Percent_Identity=27.9491833030853, Blast_Score=183, Evalue=2e-46, Organism=Caenorhabditis elegans, GI17554804, Length=477, Percent_Identity=30.8176100628931, Blast_Score=177, Evalue=8e-45, Organism=Caenorhabditis elegans, GI71995588, Length=469, Percent_Identity=28.5714285714286, Blast_Score=174, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17569475, Length=527, Percent_Identity=25.0474383301708, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI71998244, Length=408, Percent_Identity=29.4117647058824, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI212642127, Length=454, Percent_Identity=26.431718061674, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI115534083, Length=512, Percent_Identity=21.875, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17542050, Length=287, Percent_Identity=28.2229965156794, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI25143236, Length=465, Percent_Identity=22.7956989247312, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17542048, Length=418, Percent_Identity=22.0095693779904, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI221329674, Length=500, Percent_Identity=29.6, Blast_Score=218, Evalue=9e-57, Organism=Drosophila melanogaster, GI24639514, Length=500, Percent_Identity=29.6, Blast_Score=217, Evalue=1e-56, Organism=Drosophila melanogaster, GI24582567, Length=473, Percent_Identity=29.5983086680761, Blast_Score=210, Evalue=1e-54, Organism=Drosophila melanogaster, GI24639516, Length=520, Percent_Identity=28.4615384615385, Blast_Score=209, Evalue=3e-54, Organism=Drosophila melanogaster, GI281364136, Length=526, Percent_Identity=29.277566539924, Blast_Score=207, Evalue=2e-53, Organism=Drosophila melanogaster, GI281363702, Length=501, Percent_Identity=29.7405189620758, Blast_Score=198, Evalue=9e-51, Organism=Drosophila melanogaster, GI24655079, Length=535, Percent_Identity=30.0934579439252, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI24762620, Length=487, Percent_Identity=29.3634496919918, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24661428, Length=507, Percent_Identity=26.6272189349112, Blast_Score=191, Evalue=1e-48, Organism=Drosophila melanogaster, GI281365034, Length=494, Percent_Identity=29.9595141700405, Blast_Score=191, Evalue=1e-48, Organism=Drosophila melanogaster, GI19921936, Length=515, Percent_Identity=26.2135922330097, Blast_Score=191, Evalue=1e-48, Organism=Drosophila melanogaster, GI45551088, Length=530, Percent_Identity=28.4905660377358, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24652942, Length=530, Percent_Identity=28.4905660377358, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI24639853, Length=557, Percent_Identity=27.6481149012567, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI19921352, Length=500, Percent_Identity=29, Blast_Score=183, Evalue=2e-46, Organism=Drosophila melanogaster, GI24584353, Length=500, Percent_Identity=29, Blast_Score=183, Evalue=2e-46, Organism=Drosophila melanogaster, GI17136952, Length=499, Percent_Identity=26.4529058116232, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI281364394, Length=444, Percent_Identity=27.4774774774775, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI28574704, Length=444, Percent_Identity=27.4774774774775, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI17136950, Length=444, Percent_Identity=27.4774774774775, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI28574702, Length=444, Percent_Identity=27.4774774774775, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI45550877, Length=502, Percent_Identity=26.0956175298805, Blast_Score=176, Evalue=3e-44, Organism=Drosophila melanogaster, GI24654186, Length=352, Percent_Identity=30.3977272727273, Blast_Score=164, Evalue=2e-40, Organism=Drosophila melanogaster, GI45551183, Length=450, Percent_Identity=28, Blast_Score=163, Evalue=3e-40, Organism=Drosophila melanogaster, GI24582569, Length=443, Percent_Identity=27.313769751693, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI281363700, Length=337, Percent_Identity=32.3442136498516, Blast_Score=152, Evalue=5e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 55390; Mature: 55390
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKRDQWGSKLGFIISAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLI CCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCEEHHHHHHHHHHCCCHHHH LEYGMGHKYKGSTPLAMARAKKKWEWLGWWPTISAFIILCYYSMILSWAINYLRFSFTRG HHHCCCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC WGNDSNSFFHNDFLHLTSSPFDFGGIVWPIFIGIAIIWLINWTICYKGIKGGIEKVNKVL CCCCCCCCHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPMLIIIMVVIAIRGVTLEGASLGLNTLFTPDWSKVLDPKVWVAAYGQVFFSLSLAMGIM HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ITYSSYLPKKTDINNSAFMTAFANCGFEFLCAIAVFGILGYMANVQGVPVSEVVSSGVGL HHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCE AFVVFPEVFSAMGSWGTILGILFFACLIFAGITSTVSLTEAVSAPFVDKFEWKRNKVITV EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEE FCLIGFSISAAFASGAGLYLLDIIDNFINNYGIVVVGLLEVTLVGWILKPYTIREHTNEI HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEHHCCCCC SYFRIGKWWDVTVKYVTPAILIFMLIQSLITEIKSPYGGYPLSALFMYGWSVILIGIVSA CEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH IIITKRPWKNKKMSNFDN HHHCCCCCCCCCCCCCCC >Mature Secondary Structure MNEKRDQWGSKLGFIISAIGSAVGLGNIWRFPYVAYSNGGGAFLIPYFFAIFTAGIPLLI CCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCEEHHHHHHHHHHCCCHHHH LEYGMGHKYKGSTPLAMARAKKKWEWLGWWPTISAFIILCYYSMILSWAINYLRFSFTRG HHHCCCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC WGNDSNSFFHNDFLHLTSSPFDFGGIVWPIFIGIAIIWLINWTICYKGIKGGIEKVNKVL CCCCCCCCHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPMLIIIMVVIAIRGVTLEGASLGLNTLFTPDWSKVLDPKVWVAAYGQVFFSLSLAMGIM HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ITYSSYLPKKTDINNSAFMTAFANCGFEFLCAIAVFGILGYMANVQGVPVSEVVSSGVGL HHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCE AFVVFPEVFSAMGSWGTILGILFFACLIFAGITSTVSLTEAVSAPFVDKFEWKRNKVITV EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEE FCLIGFSISAAFASGAGLYLLDIIDNFINNYGIVVVGLLEVTLVGWILKPYTIREHTNEI HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEHHCCCCC SYFRIGKWWDVTVKYVTPAILIFMLIQSLITEIKSPYGGYPLSALFMYGWSVILIGIVSA CEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH IIITKRPWKNKKMSNFDN HHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]