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The map label for this gene is ylmH [H]

Identifier: 187934764

GI number: 187934764

Start: 2519027

End: 2519791

Strand: Reverse

Name: ylmH [H]

Synonym: CLL_A2434

Alternate gene names: 187934764

Gene position: 2519791-2519027 (Counterclockwise)

Preceding gene: 187934187

Following gene: 187934008

Centisome position: 66.3

GC content: 25.88

Gene sequence:

>765_bases
ATGAAAGAAAAAATAATTAATTATTTCTCAGAAGAGGATAAGATTGAAGCATTAAACTTATATGAAAAATATATTCTAGC
AGTAGATAAAGACATATCTGTTTTTGGAAATTATTTTTATTCACCAAAAATATGGAAATGGTTTAAGGAAAATTGTGAAA
CTAGCAAATTTAAAGTTACTTGTGAGGGTATTTTTAAGAACTGTGAAAGAAAGATGATTTCATTTAATAATATTTATGAT
AGTCCTTTTCCTATAAAATTGCTTAAAGTTGAGGGGAAATCTAAGTTTTCTAATTTAGAGCATAAGGATTTTCTAGGTGG
AATCTTGTCACTAGGAATAGAAAGAAATAAAATTGGAGATTTAATAGTCGAAGATAATGTATGTTATTTACCCATCCATG
AAGATATAGCAAAGTTTCTATTATCTAATGTTGATAAAATTGGAAAGACTCCCTGCAGTATTACTGAAATACAAAATGAG
GGAGACTTTCCTGAAATAAAGTTTAAAGAGGATATCATTTTAATCTCTTCTTTAAGAATTGATGGGATTGTTTCAAAAAT
ATCTAAGTTATCTAGAGCAAAAGCTCAAATGTTAATAGATCAAGGTCAAGTTTTAATTGATTATATTAAAGTTAAAGATA
AAAGTTATGAAGTTAAAATTGATGAAAGAATTGTTATAAGAGGAATTGGAAAATTCATTATAGGAGAAGTTATTGGAAGC
AGTAAAAGCGGAAAATATAAACTGATTATAAAAAAATATACATAG

Upstream 100 bases:

>100_bases
ATAAGTTTATGCCAAATATGATGGTGGATTTTTCACCTATTTTTGCAATTTTTGCATTAGACATAATTAAGGCTATTATA
TTATCTGTAATATATTGATT

Downstream 100 bases:

>100_bases
TTGAGGTGAGTTTATGAAATTAACACCAATGGATATAACAAATAAAGAATTCAAAAAAGGATTAAGAGGATATAACGTAG
AAGAAGTTGATGAATTTTTA

Product: S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKEKIINYFSEEDKIEALNLYEKYILAVDKDISVFGNYFYSPKIWKWFKENCETSKFKVTCEGIFKNCERKMISFNNIYD
SPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVEDNVCYLPIHEDIAKFLLSNVDKIGKTPCSITEIQNE
GDFPEIKFKEDIILISSLRIDGIVSKISKLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGS
SKSGKYKLIIKKYT

Sequences:

>Translated_254_residues
MKEKIINYFSEEDKIEALNLYEKYILAVDKDISVFGNYFYSPKIWKWFKENCETSKFKVTCEGIFKNCERKMISFNNIYD
SPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVEDNVCYLPIHEDIAKFLLSNVDKIGKTPCSITEIQNE
GDFPEIKFKEDIILISSLRIDGIVSKISKLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGS
SKSGKYKLIIKKYT
>Mature_254_residues
MKEKIINYFSEEDKIEALNLYEKYILAVDKDISVFGNYFYSPKIWKWFKENCETSKFKVTCEGIFKNCERKMISFNNIYD
SPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVEDNVCYLPIHEDIAKFLLSNVDKIGKTPCSITEIQNE
GDFPEIKFKEDIILISSLRIDGIVSKISKLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGS
SKSGKYKLIIKKYT

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29253; Mature: 29253

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIINYFSEEDKIEALNLYEKYILAVDKDISVFGNYFYSPKIWKWFKENCETSKFKVT
CCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEE
CEGIFKNCERKMISFNNIYDSPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGD
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCC
LIVEDNVCYLPIHEDIAKFLLSNVDKIGKTPCSITEIQNEGDFPEIKFKEDIILISSLRI
EEEECCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCEEEEECCCH
DGIVSKISKLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGS
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCEEEEEHHHHHHHHHHHCC
SKSGKYKLIIKKYT
CCCCCEEEEEEECC
>Mature Secondary Structure
MKEKIINYFSEEDKIEALNLYEKYILAVDKDISVFGNYFYSPKIWKWFKENCETSKFKVT
CCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEE
CEGIFKNCERKMISFNNIYDSPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGD
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCC
LIVEDNVCYLPIHEDIAKFLLSNVDKIGKTPCSITEIQNEGDFPEIKFKEDIILISSLRI
EEEECCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCEEEEECCCH
DGIVSKISKLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGS
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCEEEEEHHHHHHHHHHHCC
SKSGKYKLIIKKYT
CCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]