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The map label for this gene is ssb [H]

Identifier: 187934672

GI number: 187934672

Start: 2353415

End: 2353840

Strand: Reverse

Name: ssb [H]

Synonym: CLL_A2275

Alternate gene names: 187934672

Gene position: 2353840-2353415 (Counterclockwise)

Preceding gene: 187933380

Following gene: 187935045

Centisome position: 61.94

GC content: 30.05

Gene sequence:

>426_bases
ATGAATAAGGCAATATATACAGGAAATATAGTAAGAGATATTAATTTAACATATGTTCAAGGAAGTGGAGCAGCAGTATT
AAAAAACACTGTTGCAGTAAGAAGAAAGATTAAAAATAAGACTAGTGGTCAATATGATAGTGATTTTATACCATTTGTAG
CATTTGGTGTACAAGCAGAATTTATAGCAAATAATTTTGAAAAAGGACAAGGCATACAACTAGAAACATATATGAAAAGT
GGAAGTTATACAAAAGGTGGCATAAAACATTATACATTAGAAGCTGTAGTGGATAGTGTAGAGTTTATGGGTGCAAAACC
TAATACTTATAATCAAGATTGCCAAGGCTCTAATAACTTTCCAGATATGAATCAAGATTATGAGGATAATATAACACCAG
TAGATTATGGTAATTCACCATTTTAG

Upstream 100 bases:

>100_bases
GGTGTGCTGGACTATGTGATCTAGCACTAGAATGTAAAGGAACAAATAAACATGAAGTATGTAAAAGATGGCTTAATCAA
CAAATCTAGGAGGAAGAACA

Downstream 100 bases:

>100_bases
AAGAGGTGAAGAATGAATCCACAGGAGATAATGGATACAATCAGAAAAGCACAGGAAGAGTTAAGTAATTTAAATGCTAA
GTTATTTAAATATGGAAGAG

Product: single-strand binding protein family

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNKAIYTGNIVRDINLTYVQGSGAAVLKNTVAVRRKIKNKTSGQYDSDFIPFVAFGVQAEFIANNFEKGQGIQLETYMKS
GSYTKGGIKHYTLEAVVDSVEFMGAKPNTYNQDCQGSNNFPDMNQDYEDNITPVDYGNSPF

Sequences:

>Translated_141_residues
MNKAIYTGNIVRDINLTYVQGSGAAVLKNTVAVRRKIKNKTSGQYDSDFIPFVAFGVQAEFIANNFEKGQGIQLETYMKS
GSYTKGGIKHYTLEAVVDSVEFMGAKPNTYNQDCQGSNNFPDMNQDYEDNITPVDYGNSPF
>Mature_141_residues
MNKAIYTGNIVRDINLTYVQGSGAAVLKNTVAVRRKIKNKTSGQYDSDFIPFVAFGVQAEFIANNFEKGQGIQLETYMKS
GSYTKGGIKHYTLEAVVDSVEFMGAKPNTYNQDCQGSNNFPDMNQDYEDNITPVDYGNSPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15648; Mature: 15648

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAIYTGNIVRDINLTYVQGSGAAVLKNTVAVRRKIKNKTSGQYDSDFIPFVAFGVQAE
CCCEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHH
FIANNFEKGQGIQLETYMKSGSYTKGGIKHYTLEAVVDSVEFMGAKPNTYNQDCQGSNNF
HHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDMNQDYEDNITPVDYGNSPF
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKAIYTGNIVRDINLTYVQGSGAAVLKNTVAVRRKIKNKTSGQYDSDFIPFVAFGVQAE
CCCEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHH
FIANNFEKGQGIQLETYMKSGSYTKGGIKHYTLEAVVDSVEFMGAKPNTYNQDCQGSNNF
HHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDMNQDYEDNITPVDYGNSPF
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]