| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is luxS [H]
Identifier: 187933093
GI number: 187933093
Start: 2930259
End: 2930714
Strand: Reverse
Name: luxS [H]
Synonym: CLL_A2855
Alternate gene names: 187933093
Gene position: 2930714-2930259 (Counterclockwise)
Preceding gene: 187932404
Following gene: 187935688
Centisome position: 77.12
GC content: 30.7
Gene sequence:
>456_bases ATGGAAAAAGTAGAAAGTTTTGAATTAGATCACAGAAAGGTTAAAGCACCATACATAAGAAAATGTTGTTTGCTTGATGG TAAGCTTGGAGATAAGGTAACAAAGTTTGATATAAGATTTCTTCAACCTAACAAAGAAGAATTTGGTACAGCAGCAATGC ATGGACTTGAACATTTATTAGCACATGAACTTAGAGCAAAATTAGAAGGTATAATTGATTTATCACCTATGGGATGTAGA ACAGGTTTCTATTTAAGTATATGGGGTGATAGAGAAGCATCAGAAATAAAAGAAGCATTAGAATACTCATTAGAAAAAGT TTTAGAAGCAAAAGAAATACCAGCAGCTAATGATATTCAATGTGGAAATTATAGAGATTTATCTTTATTTGGTGCAAAAG AATATGCTAAGGAAGCATTAGAAAGAGGATTTTCTCTTAATATATACGGAGAATAA
Upstream 100 bases:
>100_bases TGTTATGAATAATCCATATGTAGCTAAAAGAATAAGTCAAAGTATAGAAAATATTCTATTAACAGTAAATAAAAATCAAT TCGTTTAGGAGGATACAATA
Downstream 100 bases:
>100_bases AATGTATAATATTAAACAACTTAAAATACCTAAGGATGAAGTCCTTAGGTATTTAGGTTATAAAAAGCAAGAATTAACAG TATCAATGGATGTATTAATA
Product: S-ribosylhomocysteinase
Products: NA
Alternate protein names: AI-2 synthesis protein; Autoinducer-2 production protein luxS [H]
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MEKVESFELDHRKVKAPYIRKCCLLDGKLGDKVTKFDIRFLQPNKEEFGTAAMHGLEHLLAHELRAKLEGIIDLSPMGCR TGFYLSIWGDREASEIKEALEYSLEKVLEAKEIPAANDIQCGNYRDLSLFGAKEYAKEALERGFSLNIYGE
Sequences:
>Translated_151_residues MEKVESFELDHRKVKAPYIRKCCLLDGKLGDKVTKFDIRFLQPNKEEFGTAAMHGLEHLLAHELRAKLEGIIDLSPMGCR TGFYLSIWGDREASEIKEALEYSLEKVLEAKEIPAANDIQCGNYRDLSLFGAKEYAKEALERGFSLNIYGE >Mature_151_residues MEKVESFELDHRKVKAPYIRKCCLLDGKLGDKVTKFDIRFLQPNKEEFGTAAMHGLEHLLAHELRAKLEGIIDLSPMGCR TGFYLSIWGDREASEIKEALEYSLEKVLEAKEIPAANDIQCGNYRDLSLFGAKEYAKEALERGFSLNIYGE
Specific function: Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is ca
COG id: COG1854
COG function: function code T; LuxS protein involved in autoinducer AI2 synthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the luxS family [H]
Homologues:
Organism=Escherichia coli, GI1789043, Length=154, Percent_Identity=40.2597402597403, Blast_Score=120, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR003815 - ProDom: PD013172 [H]
Pfam domain/function: PF02664 LuxS [H]
EC number: =4.4.1.21 [H]
Molecular weight: Translated: 17174; Mature: 17174
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKVESFELDHRKVKAPYIRKCCLLDGKLGDKVTKFDIRFLQPNKEEFGTAAMHGLEHLL CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH AHELRAKLEGIIDLSPMGCRTGFYLSIWGDREASEIKEALEYSLEKVLEAKEIPAANDIQ HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC CGNYRDLSLFGAKEYAKEALERGFSLNIYGE CCCCCCHHHHCHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure MEKVESFELDHRKVKAPYIRKCCLLDGKLGDKVTKFDIRFLQPNKEEFGTAAMHGLEHLL CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH AHELRAKLEGIIDLSPMGCRTGFYLSIWGDREASEIKEALEYSLEKVLEAKEIPAANDIQ HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC CGNYRDLSLFGAKEYAKEALERGFSLNIYGE CCCCCCHHHHCHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA