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The map label for this gene is potC [H]

Identifier: 187932927

GI number: 187932927

Start: 1004092

End: 1004892

Strand: Reverse

Name: potC [H]

Synonym: CLL_A0994

Alternate gene names: 187932927

Gene position: 1004892-1004092 (Counterclockwise)

Preceding gene: 187933229

Following gene: 187933694

Centisome position: 26.44

GC content: 26.97

Gene sequence:

>801_bases
ATGGTAAGTAAACTAGAAAGTTTTATTAAAAAATTCTATTTAGTTATTATATTTTTATTCTTATATACGCCTATCATTAC
TTTGATGGTATTTTCATTTAATAGTTCAAAAACCATGGGAAGATGGACTGGATTTACATTTAAGTGGTATAAAGAATTAT
TTAACAATGATAGACTTATGTCTGCACTTTATTATACTTTATTAATAGCTATTATAGCATCAATTATAGCTACTATAGTG
GGTACAATAAGTGCAATCGGTATACACAAACTTAGAGGCAAGAAAAAATCTTTCATATTAAATATTAATTATTTACCTGT
TTTAAACCCAGATATAGTTACAGGTATAGCCCTTATGTCTATGTTTATATTTATTAATTTAAAATTTGGATTTACTACTA
TGTTATTAGCACATATTACATTTGATATTCCTTATGTAATTCTTTCAGTTCTTCCGAAATTAAAGCAGTTACCTGAAAAT
ACTGTAGAAGCTGCGGAAGATTTAGGTGCTACTCCACTATATGCTATTAGAAAAGTTATACTACCTCAAATAAAGCCTGG
TATAATCTCAGGGTTCCTTATGGCATTCACAATGTCAATAGATGACTTTGTTATAAGTTTCTTTACAACGGGTCCTGGAG
TTACTAATTTATCTATAGAGATTTATTCTATGGCTAGAAGAGGTATTAAACCTGAAATTAATGCTCTTTCAACATTAATG
TTCTTAACTGTTTTAACTTTATTAATAATAGTAAATAAAAAACAAAATCTTACAAGAGGTGAACAATTTGAAAAAATTTA
A

Upstream 100 bases:

>100_bases
GATCTGCAATCTCAATATTAATGATGATAATTATATTAATATTTATGAGAATTGCTTCTAAATTCGAAAATGATGACAGC
AAAGAAGGTGGTGGACAATT

Downstream 100 bases:

>100_bases
ATTATTCGGTGCTTTAGCATTAACAAGTTTATTGACTTTAGGTATTTTCTCAGGATGTGCTGACAAAAACATAGGACAAA
ATGGTACAGTTTATTTTTAT

Product: spermidine/putrescine transport system permease protein PotC

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVSKLESFIKKFYLVIIFLFLYTPIITLMVFSFNSSKTMGRWTGFTFKWYKELFNNDRLMSALYYTLLIAIIASIIATIV
GTISAIGIHKLRGKKKSFILNINYLPVLNPDIVTGIALMSMFIFINLKFGFTTMLLAHITFDIPYVILSVLPKLKQLPEN
TVEAAEDLGATPLYAIRKVILPQIKPGIISGFLMAFTMSIDDFVISFFTTGPGVTNLSIEIYSMARRGIKPEINALSTLM
FLTVLTLLIIVNKKQNLTRGEQFEKI

Sequences:

>Translated_266_residues
MVSKLESFIKKFYLVIIFLFLYTPIITLMVFSFNSSKTMGRWTGFTFKWYKELFNNDRLMSALYYTLLIAIIASIIATIV
GTISAIGIHKLRGKKKSFILNINYLPVLNPDIVTGIALMSMFIFINLKFGFTTMLLAHITFDIPYVILSVLPKLKQLPEN
TVEAAEDLGATPLYAIRKVILPQIKPGIISGFLMAFTMSIDDFVISFFTTGPGVTNLSIEIYSMARRGIKPEINALSTLM
FLTVLTLLIIVNKKQNLTRGEQFEKI
>Mature_266_residues
MVSKLESFIKKFYLVIIFLFLYTPIITLMVFSFNSSKTMGRWTGFTFKWYKELFNNDRLMSALYYTLLIAIIASIIATIV
GTISAIGIHKLRGKKKSFILNINYLPVLNPDIVTGIALMSMFIFINLKFGFTTMLLAHITFDIPYVILSVLPKLKQLPEN
TVEAAEDLGATPLYAIRKVILPQIKPGIISGFLMAFTMSIDDFVISFFTTGPGVTNLSIEIYSMARRGIKPEINALSTLM
FLTVLTLLIIVNKKQNLTRGEQFEKI

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=235, Percent_Identity=38.2978723404255, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787081, Length=241, Percent_Identity=41.0788381742739, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787714, Length=213, Percent_Identity=30.0469483568075, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788764, Length=174, Percent_Identity=29.3103448275862, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30067; Mature: 30067

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKLESFIKKFYLVIIFLFLYTPIITLMVFSFNSSKTMGRWTGFTFKWYKELFNNDRLM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHCCCHHH
SALYYTLLIAIIASIIATIVGTISAIGIHKLRGKKKSFILNINYLPVLNPDIVTGIALMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
MFIFINLKFGFTTMLLAHITFDIPYVILSVLPKLKQLPENTVEAAEDLGATPLYAIRKVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
LPQIKPGIISGFLMAFTMSIDDFVISFFTTGPGVTNLSIEIYSMARRGIKPEINALSTLM
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH
FLTVLTLLIIVNKKQNLTRGEQFEKI
HHHHHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure
MVSKLESFIKKFYLVIIFLFLYTPIITLMVFSFNSSKTMGRWTGFTFKWYKELFNNDRLM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHCCCHHH
SALYYTLLIAIIASIIATIVGTISAIGIHKLRGKKKSFILNINYLPVLNPDIVTGIALMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
MFIFINLKFGFTTMLLAHITFDIPYVILSVLPKLKQLPENTVEAAEDLGATPLYAIRKVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
LPQIKPGIISGFLMAFTMSIDDFVISFFTTGPGVTNLSIEIYSMARRGIKPEINALSTLM
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHH
FLTVLTLLIIVNKKQNLTRGEQFEKI
HHHHHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]