| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is manR [H]
Identifier: 187932863
GI number: 187932863
Start: 3738710
End: 3740596
Strand: Reverse
Name: manR [H]
Synonym: CLL_A3533
Alternate gene names: 187932863
Gene position: 3740596-3738710 (Counterclockwise)
Preceding gene: 187935251
Following gene: 187933648
Centisome position: 98.43
GC content: 24.7
Gene sequence:
>1887_bases TTGATTACACTTAACAAGAGACAGAAGGATATAATTAATTTTTTAGAATCAAAAGATGAATACGTAACAATTGATTGTAT TGCTAAGTTTTTTGAAGTTAGTTCTAGAACAATTAGAAATGACTTAGACTCTATTGAAGATTTAATAAAAGAATCAAATA TAATTCTCGAAAGAAAGCCAAGAGTAGGAATTAAATTAATTCTTAAAAATGGCCAAGATATTCAAGAAGTAATAAATGAA CAGGATTATAAAGTTTATTCTTCTGATGACAGAATAACAGTAATTATATTGAGTTTAATTATAAAAGGTAAAGTGACAAT AGAAGAGTTAGCTAAGGATGTTGATGTTAGTAAGAATACATTAGTTCAAGATTTTAAATTAGTAACTGCTAAATTAGAAG AATATGATATACAGGTTTCAAAGAAAACATATTACGGAATAACTATAAAGGACAATGAAGAAAAAATAAGAAATGTTTTT TTCAGTATATATAGTAAATTAAGTGATGAGCTGAAACATGATATTAAAGAGAGGCTAACACAAGAAACAAATCTAAAGGA TTCTGTTATCAAAGAAAAGATAGAGAAAATAGAAAAAAATATAGGCACAGTATATTCTGAGGAATCAATAGAAGAATTAG AGATTATAATTTTACTATCAATAAATAGATATAATAATAATTTCAAAATTGATTATTCTGAAAGGGAAAAAAATAGTTTA ATAAGGAGAAGAGAATTTAGTGTTTTAAAAGAAATTTTAAGTTTAGATGACTTAGAAATATGTTATTTATTAAAAATATC TGATGGATCTAGAAGAGCTGTTGGGGGAAAAGTAAATAATATAACACAAGAAATATTAGATGAACTTTGCAAAACTCTTA ATATAGACTGTAGTAATGATTTAGAATTTACAAGCCAAATAGCAATGCATTTAAAAGTAGCAATTCATAGAATAAAAAAC AATTTAGTTATAGAAAATCCTATGTTAGAAGAAATAAAATACAAGATGTCTTTTATATACCAAATAACTGAAACTATACT ATCAAGCAAAGAAGACATCATAGGTGTAAAGTTCCCAGAAGAAGAAATAGCATATATGGCAATGTACTTTGATGCTATAT TTGAAAGAAATATAAAATCTAAATTTACATATAAAATTTTACTAGTATGTAATGGCGGATTAGCAACATCAAGTCTTTTA AAAGTAAGAATAGGGGCCATGCTTCCTGAATTAGAAATAAAAAATGTATGTAGATTAAAAGATCTTGATAAAGAACTTGA AAATACAGATATAGACTTTATAGTAAGCACTATTCCAGTTAAAGCAGATAAATACAAGGTTATAAAAGTAAATCCGTTAT TAGATAATAGCGATGTAGATAAAATTAAAACTGAAATTTACAATAAACGTTATGAAAAAAATTGTGAGTATTTAATAGAT TTAGTTAAGAGTGATAATGAAAGTGAAATAATTAAGTTATTACCACAAGATGTTACTCAATTAGATGTAGATATTGATGA CTGGAAAGAAGCTATAGAAATAGCAACAAAACCATTAGTAAATAAAAATAAGATAACTAAAGATTATTCAAAAGAAATTA TAAAAGTTATAGAGAACTTAGGTAATTACATGGTATTTATACCTAAAGTAGCATTTGTTCATGCTACACCAGATAATGTT TTAGAAAATTCTATGGCATTATTAACTCTTAAATCAGAGATACAATTTGGCAGTAAGAACAAAGTTCCAGTTAAAGCTAT GGTTGTATTAGCAAATAAAACTGAGAATATGAATTTAGTAAACTTATTAGAAATAATTACAAAAGGCGATAATATAGAAA AATTTAAAAATGCAGCAAATTATGATGAAATAAAAAGTATAACTTAA
Upstream 100 bases:
>100_bases ATATTATAAAAGTTGCCACAATTAGTGAAGTAAATTGGTATAGAAGAAACCGATGAAACCGAATACAATAATGACATAAG GTAGCTTGAGGAGGGAAAAA
Downstream 100 bases:
>100_bases GAGAGGTAATATAAATGCTAGTAAAAGTTGTTGATAGAGTAGAGGATTATAAAGAAGCTATAAAGCTTTCTTGCGATATA TTAGAAGAAAACGGAATTGT
Product: phosphotransferase system mannitol/fructose-specific IIA domain
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MITLNKRQKDIINFLESKDEYVTIDCIAKFFEVSSRTIRNDLDSIEDLIKESNIILERKPRVGIKLILKNGQDIQEVINE QDYKVYSSDDRITVIILSLIIKGKVTIEELAKDVDVSKNTLVQDFKLVTAKLEEYDIQVSKKTYYGITIKDNEEKIRNVF FSIYSKLSDELKHDIKERLTQETNLKDSVIKEKIEKIEKNIGTVYSEESIEELEIIILLSINRYNNNFKIDYSEREKNSL IRRREFSVLKEILSLDDLEICYLLKISDGSRRAVGGKVNNITQEILDELCKTLNIDCSNDLEFTSQIAMHLKVAIHRIKN NLVIENPMLEEIKYKMSFIYQITETILSSKEDIIGVKFPEEEIAYMAMYFDAIFERNIKSKFTYKILLVCNGGLATSSLL KVRIGAMLPELEIKNVCRLKDLDKELENTDIDFIVSTIPVKADKYKVIKVNPLLDNSDVDKIKTEIYNKRYEKNCEYLID LVKSDNESEIIKLLPQDVTQLDVDIDDWKEAIEIATKPLVNKNKITKDYSKEIIKVIENLGNYMVFIPKVAFVHATPDNV LENSMALLTLKSEIQFGSKNKVPVKAMVVLANKTENMNLVNLLEIITKGDNIEKFKNAANYDEIKSIT
Sequences:
>Translated_628_residues MITLNKRQKDIINFLESKDEYVTIDCIAKFFEVSSRTIRNDLDSIEDLIKESNIILERKPRVGIKLILKNGQDIQEVINE QDYKVYSSDDRITVIILSLIIKGKVTIEELAKDVDVSKNTLVQDFKLVTAKLEEYDIQVSKKTYYGITIKDNEEKIRNVF FSIYSKLSDELKHDIKERLTQETNLKDSVIKEKIEKIEKNIGTVYSEESIEELEIIILLSINRYNNNFKIDYSEREKNSL IRRREFSVLKEILSLDDLEICYLLKISDGSRRAVGGKVNNITQEILDELCKTLNIDCSNDLEFTSQIAMHLKVAIHRIKN NLVIENPMLEEIKYKMSFIYQITETILSSKEDIIGVKFPEEEIAYMAMYFDAIFERNIKSKFTYKILLVCNGGLATSSLL KVRIGAMLPELEIKNVCRLKDLDKELENTDIDFIVSTIPVKADKYKVIKVNPLLDNSDVDKIKTEIYNKRYEKNCEYLID LVKSDNESEIIKLLPQDVTQLDVDIDDWKEAIEIATKPLVNKNKITKDYSKEIIKVIENLGNYMVFIPKVAFVHATPDNV LENSMALLTLKSEIQFGSKNKVPVKAMVVLANKTENMNLVNLLEIITKGDNIEKFKNAANYDEIKSIT >Mature_628_residues MITLNKRQKDIINFLESKDEYVTIDCIAKFFEVSSRTIRNDLDSIEDLIKESNIILERKPRVGIKLILKNGQDIQEVINE QDYKVYSSDDRITVIILSLIIKGKVTIEELAKDVDVSKNTLVQDFKLVTAKLEEYDIQVSKKTYYGITIKDNEEKIRNVF FSIYSKLSDELKHDIKERLTQETNLKDSVIKEKIEKIEKNIGTVYSEESIEELEIIILLSINRYNNNFKIDYSEREKNSL IRRREFSVLKEILSLDDLEICYLLKISDGSRRAVGGKVNNITQEILDELCKTLNIDCSNDLEFTSQIAMHLKVAIHRIKN NLVIENPMLEEIKYKMSFIYQITETILSSKEDIIGVKFPEEEIAYMAMYFDAIFERNIKSKFTYKILLVCNGGLATSSLL KVRIGAMLPELEIKNVCRLKDLDKELENTDIDFIVSTIPVKADKYKVIKVNPLLDNSDVDKIKTEIYNKRYEKNCEYLID LVKSDNESEIIKLLPQDVTQLDVDIDDWKEAIEIATKPLVNKNKITKDYSKEIIKVIENLGNYMVFIPKVAFVHATPDNV LENSMALLTLKSEIQFGSKNKVPVKAMVVLANKTENMNLVNLLEIITKGDNIEKFKNAANYDEIKSIT
Specific function: May regulate the expression of the mannose operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2 [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 72524; Mature: 72524
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITLNKRQKDIINFLESKDEYVTIDCIAKFFEVSSRTIRNDLDSIEDLIKESNIILERKP CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC RVGIKLILKNGQDIQEVINEQDYKVYSSDDRITVIILSLIIKGKVTIEELAKDVDVSKNT CCCEEEEECCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHH LVQDFKLVTAKLEEYDIQVSKKTYYGITIKDNEEKIRNVFFSIYSKLSDELKHDIKERLT HHHHHHHHHHHHHHHEEEEECEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QETNLKDSVIKEKIEKIEKNIGTVYSEESIEELEIIILLSINRYNNNFKIDYSEREKNSL HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECHHHHHHH IRRREFSVLKEILSLDDLEICYLLKISDGSRRAVGGKVNNITQEILDELCKTLNIDCSND HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LEFTSQIAMHLKVAIHRIKNNLVIENPMLEEIKYKMSFIYQITETILSSKEDIIGVKFPE HHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCH EEIAYMAMYFDAIFERNIKSKFTYKILLVCNGGLATSSLLKVRIGAMLPELEIKNVCRLK HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHH DLDKELENTDIDFIVSTIPVKADKYKVIKVNPLLDNSDVDKIKTEIYNKRYEKNCEYLID HHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHH LVKSDNESEIIKLLPQDVTQLDVDIDDWKEAIEIATKPLVNKNKITKDYSKEIIKVIENL HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC GNYMVFIPKVAFVHATPDNVLENSMALLTLKSEIQFGSKNKVPVKAMVVLANKTENMNLV CCEEEEEEEEEEEECCCHHHHHCCCEEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCHHH NLLEIITKGDNIEKFKNAANYDEIKSIT HHHHHHHCCCCHHHHHCCCCHHHHCCCC >Mature Secondary Structure MITLNKRQKDIINFLESKDEYVTIDCIAKFFEVSSRTIRNDLDSIEDLIKESNIILERKP CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC RVGIKLILKNGQDIQEVINEQDYKVYSSDDRITVIILSLIIKGKVTIEELAKDVDVSKNT CCCEEEEECCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHH LVQDFKLVTAKLEEYDIQVSKKTYYGITIKDNEEKIRNVFFSIYSKLSDELKHDIKERLT HHHHHHHHHHHHHHHEEEEECEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QETNLKDSVIKEKIEKIEKNIGTVYSEESIEELEIIILLSINRYNNNFKIDYSEREKNSL HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECHHHHHHH IRRREFSVLKEILSLDDLEICYLLKISDGSRRAVGGKVNNITQEILDELCKTLNIDCSND HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LEFTSQIAMHLKVAIHRIKNNLVIENPMLEEIKYKMSFIYQITETILSSKEDIIGVKFPE HHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCH EEIAYMAMYFDAIFERNIKSKFTYKILLVCNGGLATSSLLKVRIGAMLPELEIKNVCRLK HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHH DLDKELENTDIDFIVSTIPVKADKYKVIKVNPLLDNSDVDKIKTEIYNKRYEKNCEYLID HHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHH LVKSDNESEIIKLLPQDVTQLDVDIDDWKEAIEIATKPLVNKNKITKDYSKEIIKVIENL HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC GNYMVFIPKVAFVHATPDNVLENSMALLTLKSEIQFGSKNKVPVKAMVVLANKTENMNLV CCEEEEEEEEEEEECCCHHHHHCCCEEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCHHH NLLEIITKGDNIEKFKNAANYDEIKSIT HHHHHHHCCCCHHHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]