Click here to switch to the map view.

The map label for this gene is rplY

Identifier: 187918701

GI number: 187918701

Start: 834855

End: 835403

Strand: Direct

Name: rplY

Synonym: BH0786

Alternate gene names: 187918701

Gene position: 834855-835403 (Clockwise)

Preceding gene: 187918638

Following gene: 187918639

Centisome position: 90.52

GC content: 33.15

Gene sequence:

>549_bases
GTGGATAGTAGTAGGATTTTAAGATATGAAGGTCGGTTAGATTTTGGTTCTTTGCGTGCCCGTAGAATACGAGCAGAGTC
TGAGATTCCAGCTGTTGTGTATGGAAAGGAAAGTGATGTTCTGCATATAAAAATTAAGAGTAGTGAGTTTAATAATAAGT
TTGCAAAGTTTACAGATAATACTGTCTTGATTTTAAGTGACGGAAAAATTGAGAAATGTGTTTTCATTAAGGATGTGAGC
GAAAATCTTACTAAAAGACTTATTTATCATGTTGATTTTTATGAGGTTGATAAGACTAAGGATATTGAAAGAGATATTGC
AATTAAATTTGTAGGAGCTTCTGTTGGTGTTAAGGAAGGTGGTACTTTAAGTGTGCTTCGAACTAAAATCAAGGTTAAGT
CTTTGCCTTTAAATTTGCCAGAATTCGTTGAAGTAGATTTGACCCCTGTTAAGAAGGGAGATCAAGTAACTTTTAAGGAT
ATTGTACTTCCTGATAATGTTAAACTTTCTGAAGAGAATGAGAATTCAGTTGTTTTGCTTGTAAAATAG

Upstream 100 bases:

>100_bases
GTATTTGGGACGTGGACAAGTGGTAAGTCACCTGGTTTTGGTCCAGGCATTCGAGGGTTCGAATCCTTCCGTCCCAGTAT
TTTATATTAGGAGTTTCATT

Downstream 100 bases:

>100_bases
AGAGTTATGGATTTGTTAATAGTTGGCCTGGGTAATCCCGGGTCTAATTTTTTTCATACTAGACATAATGTTGGTTTTGA
ACTTGTAGATAACTTGGTTA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDSSRILRYEGRLDFGSLRARRIRAESEIPAVVYGKESDVLHIKIKSSEFNNKFAKFTDNTVLILSDGKIEKCVFIKDVS
ENLTKRLIYHVDFYEVDKTKDIERDIAIKFVGASVGVKEGGTLSVLRTKIKVKSLPLNLPEFVEVDLTPVKKGDQVTFKD
IVLPDNVKLSEENENSVVLLVK

Sequences:

>Translated_182_residues
MDSSRILRYEGRLDFGSLRARRIRAESEIPAVVYGKESDVLHIKIKSSEFNNKFAKFTDNTVLILSDGKIEKCVFIKDVS
ENLTKRLIYHVDFYEVDKTKDIERDIAIKFVGASVGVKEGGTLSVLRTKIKVKSLPLNLPEFVEVDLTPVKKGDQVTFKD
IVLPDNVKLSEENENSVVLLVK
>Mature_182_residues
MDSSRILRYEGRLDFGSLRARRIRAESEIPAVVYGKESDVLHIKIKSSEFNNKFAKFTDNTVLILSDGKIEKCVFIKDVS
ENLTKRLIYHVDFYEVDKTKDIERDIAIKFVGASVGVKEGGTLSVLRTKIKVKSLPLNLPEFVEVDLTPVKKGDQVTFKD
IVLPDNVKLSEENENSVVLLVK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_BORHD (B2S1C8)

Other databases:

- EMBL:   CP000048
- RefSeq:   YP_001884204.1
- EnsemblBacteria:   EBBORT00000006905
- GeneID:   6277080
- GenomeReviews:   CP000048_GR
- KEGG:   bhr:BH0786
- GeneTree:   EBGT00050000006987
- HOGENOM:   HBG731986
- OMA:   TDNTVLI
- ProtClustDB:   PRK05618
- BioCyc:   BHER314723:BH0786-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20602; Mature: 20602

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSRILRYEGRLDFGSLRARRIRAESEIPAVVYGKESDVLHIKIKSSEFNNKFAKFTDN
CCCCEEEEEECCCCHHHHHHEEEECCCCCCEEEECCCCCEEEEEEECCCCCCCEEEECCC
TVLILSDGKIEKCVFIKDVSENLTKRLIYHVDFYEVDKTKDIERDIAIKFVGASVGVKEG
EEEEEECCCEEEEEEEEEHHHHHHHHEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC
GTLSVLRTKIKVKSLPLNLPEFVEVDLTPVKKGDQVTFKDIVLPDNVKLSEENENSVVLL
CEEEEEEEEEEEEECCCCCCHHEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCEEEE
VK
EC
>Mature Secondary Structure
MDSSRILRYEGRLDFGSLRARRIRAESEIPAVVYGKESDVLHIKIKSSEFNNKFAKFTDN
CCCCEEEEEECCCCHHHHHHEEEECCCCCCEEEECCCCCEEEEEEECCCCCCCEEEECCC
TVLILSDGKIEKCVFIKDVSENLTKRLIYHVDFYEVDKTKDIERDIAIKFVGASVGVKEG
EEEEEECCCEEEEEEEEEHHHHHHHHEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC
GTLSVLRTKIKVKSLPLNLPEFVEVDLTPVKKGDQVTFKDIVLPDNVKLSEENENSVVLL
CEEEEEEEEEEEEECCCCCCHHEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCEEEE
VK
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA