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The map label for this gene is yfcS [H]

Identifier: 187733882

GI number: 187733882

Start: 2515322

End: 2516074

Strand: Reverse

Name: yfcS [H]

Synonym: SbBS512_E2716

Alternate gene names: 187733882

Gene position: 2516074-2515322 (Counterclockwise)

Preceding gene: 187731011

Following gene: 187730404

Centisome position: 54.51

GC content: 56.97

Gene sequence:

>753_bases
ATGTTTAATCTGACTAACACTGCAAAAATCGTTGTCCCGGCACTGGCGCTGCTGGCGACAGCGGTCAGTTTCTCCAGCCA
CGCTTCGGTGACGCCCGACAGGACACGGCTGGTGTTTAACGAAAGCGACAAGTCCATCAGCGTCACGCTGCGCAACAACG
ATCCCACACTGCCTTATCTGGCGCAGAGCTGGATAGAGGATGCAAAGGGCAACAAAATCAGCTCGCCGCTTGCGGTGCTT
CCGCCAGTGCAGCGCATCGATGCGATGATGAACGGCCAGGTGAAGGTGCAGGGGCTGCCGGATATCAACAAACTGCCGGC
CGACCGCGAGAGCGTGTTCTATTTCAACGTGCGCGAAATTCCGCTGAAATCAAATAAACCGAACACACTGCAGATTGCGC
TGCAGACGCGTATCAAACTGTTCTGGCGACCGAAGGCGCTGGAGAACACCAGCATGAAAAGTCCGTGGCAGCATAAGGTG
ACGCTCATCCGTAACGGCCAGGACTTCACCGTCAATAACCCGACGCCGTACTACGTGATCATCAGCAACGCCAGCGCTAA
AAAAGGCGGCAACCCGCCGGCGGGATTCACACCGCTGATGATGGAGCCGAAAACCTCCGCACCGCTGAATGCGAAGATGG
ACAGCGTGCCGGTGCTGACTTACATCAACGACTACGGCGCGCGGATGCCGCTGTACTTCAAATGCACCGGCAACAGCTGC
CAGGTGGATGAAGAGCAGAGCCGCAAAGGCTGA

Upstream 100 bases:

>100_bases
GCGGTCAAACCGGCGATTCAGGAACAGACACAGCGGGTGACGCCAACGGAACCTCCGACTTCAATTTCAGTAAACCAGTA
ACGTGATTAAGGAATGATCC

Downstream 100 bases:

>100_bases
TGCCGGGAGGGACTTATGAGTCACAAGTTTGTAGCGGGCGCAGGGTTGCTGGTGCTGGCCGGATGGGGCATCAGCGGTTT
GGCTGTTGCTGGCAGTGATA

Product: fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVL
PPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREIPLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNSC
QVDEEQSRKG

Sequences:

>Translated_250_residues
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVL
PPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREIPLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNSC
QVDEEQSRKG
>Mature_250_residues
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVL
PPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREIPLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNSC
QVDEEQSRKG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=221, Percent_Identity=87.3303167420815, Blast_Score=413, Evalue=1e-117,
Organism=Escherichia coli, GI1786936, Length=243, Percent_Identity=38.2716049382716, Blast_Score=164, Evalue=3e-42,
Organism=Escherichia coli, GI87082203, Length=243, Percent_Identity=37.4485596707819, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1786333, Length=247, Percent_Identity=34.0080971659919, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787171, Length=229, Percent_Identity=33.6244541484716, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=32.579185520362, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790771, Length=230, Percent_Identity=33.4782608695652, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789532, Length=211, Percent_Identity=29.3838862559242, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786743, Length=235, Percent_Identity=30.2127659574468, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081806, Length=240, Percent_Identity=26.25, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27724; Mature: 27724

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPTLPYL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
AQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKVTLIRNGQDFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNSC
EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCC
QVDEEQSRKG
CCCHHHHCCC
>Mature Secondary Structure
MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDKSISVTLRNNDPTLPYL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
AQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDINKLPADRESVFYFNVREI
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKVTLIRNGQDFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPVLTYINDYGARMPLYFKCTGNSC
EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCC
QVDEEQSRKG
CCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]