Click here to switch to the map view.

The map label for this gene is yfcR [H]

Identifier: 187730404

GI number: 187730404

Start: 2514797

End: 2515306

Strand: Reverse

Name: yfcR [H]

Synonym: SbBS512_E2715

Alternate gene names: 187730404

Gene position: 2515306-2514797 (Counterclockwise)

Preceding gene: 187733882

Following gene: 187732683

Centisome position: 54.49

GC content: 53.53

Gene sequence:

>510_bases
ATGAGTCACAAGTTTGTAGCGGGCGCAGGGTTGCTGGTGCTGGCCGGATGGGGCATCAGCGGTTTGGCTGTTGCTGGCAG
TGATATCAAACAGGTGGATCTGACGCTGCGAATCCTGGTCGATGGACCGCCGCCTTGCTCCGTGAAGGGAAGCGCTGTGA
AATTTGGCAATGTGATAATCAACAGGATCGATGGTACCAATTACCAACAGGATGCGAAATACACCCTCAACTGCGGTAAT
AAAGTCAGCGATGACTTACGGATGCAGCTCAAAGGCAATACCGCCGTGATCAACGGAGAAACGGTTCTCAGCACGGATAT
CGCCGGCCTGGGGGTGCGGATAGAAAACGCCGCCGACAACTCCCTGTTTGCAGTTGGTGAAAATAACTGGACGCCTTTTA
ATGTCAACACTCAGCCTCAGCTGAAAGCGGTGCCGGTAAAACAGAGCGGGGTGCAACTGACGCCGTCGGAGTTTAACGCC
ACGATGACCATGGTGGTGGATTACCAATGA

Upstream 100 bases:

>100_bases
CGACTACGGCGCGCGGATGCCGCTGTACTTCAAATGCACCGGCAACAGCTGCCAGGTGGATGAAGAGCAGAGCCGCAAAG
GCTGATGCCGGGAGGGACTT

Downstream 100 bases:

>100_bases
AAAAATTCCTGCTCCTTTTACTGTGCGCTGGTTGCGGGGCTGTGCTGGCGGCGGAAGATGACATCACATTCCACGGTACG
CTGATGTCGCCGCCCGCCTG

Product: putative minor fimbrial subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGN
KVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
TMTMVVDYQ

Sequences:

>Translated_169_residues
MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGN
KVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
TMTMVVDYQ
>Mature_168_residues
SHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNK
VSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNAT
MTMVVDYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788676, Length=169, Percent_Identity=72.189349112426, Blast_Score=251, Evalue=1e-68,
Organism=Escherichia coli, GI1788675, Length=147, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17908; Mature: 17776

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVKFGNVII
CCCEEEECCCEEEEECCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEECEEEE
NRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADN
EECCCCCCCCCCEEEEECCCCCCCCEEEEECCCEEEEECCEEEEECCCEEEEEEECCCCC
SLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNATMTMVVDYQ
CEEEEECCCCCEEECCCCCCEEEECCCCCCCEECHHCCCEEEEEEEEEC
>Mature Secondary Structure 
SHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPPPCSVKGSAVKFGNVII
CCEEEECCCEEEEECCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEECEEEE
NRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETVLSTDIAGLGVRIENAADN
EECCCCCCCCCCEEEEECCCCCCCCEEEEECCCEEEEECCEEEEECCCEEEEEEECCCCC
SLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNATMTMVVDYQ
CEEEEECCCCCEEECCCCCCEEEECCCCCCCEECHHCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]