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The map label for this gene is yjfF [H]

Identifier: 187733121

GI number: 187733121

Start: 4525091

End: 4526083

Strand: Reverse

Name: yjfF [H]

Synonym: SbBS512_E4853

Alternate gene names: 187733121

Gene position: 4526083-4525091 (Counterclockwise)

Preceding gene: 187731371

Following gene: 187734017

Centisome position: 98.05

GC content: 52.87

Gene sequence:

>993_bases
GTGATAAAACGTAATTTGCCACTGATGATCACCATCGGCGTCTTTGTGCTGGGCTATTTCTACTGCCTGACGCAGTTTCC
CGGTTTTGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAACGCTTTTCTGGGGATTATTGCCGTTGGTATGACCT
TTGTGATCCTCTCTGGCGGTATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCAAAAGTGGTT
GGCGATTTCGGCCTCTCGCCGCTGCTGGCGTTTCCGCTAGTGCTGGTGATGGGCTGTGCCTTCGGCGCATTTATGGGGCT
TCTGATCGACGCCCTGAAGATCCCGGCATTTATCATTACGCTTGCGGGGATGTTCTTTTTGCGCGGCGTCAGCTATCTCG
TTTCGGAAGAGTCGATTCCGATAAACCATCCCATTTATGACACGCTCTCAAGCCTTGCGTGGAAAATCCCCGGCGGCGGT
CACCTTAGTGCGATGGGGCTGTTGATGCTGGTGGTGGTTATCGGTATTTTCCTTGCGCATCGTACCCGTTTTGGCAATCA
GGTGTACGCTATTGGCGGCAACGCGACGTCGGCGAACCTGATGGGGATTTCTACTCGCAGCACCACTATTCGCATTTATA
TGCTCTCCACCGGACTGGCAACACTGGCGGGGATTGTCTTCTCGATTTATACCCAGGCCGGATATGCACTGGCGGGCGTA
GGTGTGGAACTGGACGCCATCGCGTCGGTGGTGATTGGCGGTACGTTGTTAAGTGGTGGCGTCGGGACGGTGCTTGGGAC
GCTTTTTGGCGTGGCAATTCAGGGACTGATCCAGACTTACATCAACTTTGACGGCACGCTGAGTTCCTGGTGGACGAAAA
TCGCCATCGGTATTTTGTTGTTTATTTTTATAGCATTACAGCGTGGGTTAACGGTGCTGTGGGAGAATCGTCAGAGTTCG
CCAGTGACAAGAGTCAACATTGCGCAGCGATAA

Upstream 100 bases:

>100_bases
CCACCGGAGATGAACCAGGTGGTGAAAGCGGTGGTGGTGCTTTGCGTGCTGATTGTCCAGTCGCAACGCTTTATCAGTCT
GATTAAAGGAGTACGTAGCC

Downstream 100 bases:

>100_bases
AAATGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCAT
ATGGTCGTTGCCGACAAAGA

Product: inner membrane ABC transporter permease YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
HLSAMGLLMLVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGV
GVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSS
PVTRVNIAQR

Sequences:

>Translated_330_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
HLSAMGLLMLVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGV
GVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSS
PVTRVNIAQR
>Mature_330_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
HLSAMGLLMLVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGV
GVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSS
PVTRVNIAQR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=331, Percent_Identity=98.4894259818731, Blast_Score=632, Evalue=0.0,
Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=36.4548494983278, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=278, Percent_Identity=36.6906474820144, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789992, Length=315, Percent_Identity=32.0634920634921, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI145693152, Length=272, Percent_Identity=31.9852941176471, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790524, Length=281, Percent_Identity=30.9608540925267, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=33.9920948616601, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787793, Length=326, Percent_Identity=28.8343558282209, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34936; Mature: 34936

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGHLSAMGLLMLVVVIGIFLAH
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
RTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGV
HHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEC
GVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILL
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FIFIALQRGLTVLWENRQSSPVTRVNIAQR
HHHHHHHCCCEEEECCCCCCCCEEEECCCC
>Mature Secondary Structure
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGHLSAMGLLMLVVVIGIFLAH
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
RTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGV
HHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEC
GVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILL
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FIFIALQRGLTVLWENRQSSPVTRVNIAQR
HHHHHHHCCCEEEECCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]