Click here to switch to the map view.

The map label for this gene is ydeM [H]

Identifier: 187731705

GI number: 187731705

Start: 1603816

End: 1604460

Strand: Reverse

Name: ydeM [H]

Synonym: SbBS512_E1761

Alternate gene names: 187731705

Gene position: 1604460-1603816 (Counterclockwise)

Preceding gene: 187733320

Following gene: 187734106

Centisome position: 34.76

GC content: 37.21

Gene sequence:

>645_bases
TTGCTAACTTTAAAATCTATCGGCAGTAAACATATGCAATTTATCGAATTGCTCGAAACCGGGACGCCGAATATTGATTT
CAGTGGTCATAGTGAGAACACATTCCGTATCATTGATTTTTCTGTGCCTCCCACGGCTTATGGCAAGTTTATGTCAACCA
TTTTTATGCAATGGGTTAAAAACGATGTGGGTGAAATTTTCATTCGTCAGTTTGAAAGCTTTGTCAGCCGTTTTTTGGGG
AATGGGCATACAAGTTGTATTTTCCAGGAGTCCTGCAAGGATAATCTGGTTGTTGAAAGTAATGGAGACATTTACGAATG
CGACCATTTTGTCTATCCACAGTACAAAATTGGAAACATTAATAAATCTGAACTCAAAACGATGAACAGTGTACAACTGA
CAGCGCAAAAAAAACGGATTTCAGCGAAATGTCAGCAATGTGCATATAAATCTATCTGCAATGGCGGTTGTCCTAAGCAT
CGTATTACTAAAGTAAACAATGAGACTGTTTCTTATTTTTGCGAAGGTTATAAAATCCTTTTTTCAACCATGGTACCTTA
TATGAACGCCATGGTTGAGTTAGCTAAGAACAGAGTACCGCTTTACCACATTATGGATGTTGCAAAACAAATGGAGAATA
ATTAA

Upstream 100 bases:

>100_bases
TTCGGCAACAGTCCGAAGAGAGTTTCTAAGGAGTACCGTTGTCAAAGTCACACGGGTATGAATACGGGCAACACGATGAG
TGCTTTAGCTATTTGATTAT

Downstream 100 bases:

>100_bases
TAACGCTCTCTTTTAACTCCATTCTTAGCCTCCTTCTTATGACCTTAACAAGGCACCCGACATAAATTCCTGTCGGGTGT
TTCGTCATCATCATCTTCCC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MLTLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLG
NGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKSICNGGCPKH
RITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN

Sequences:

>Translated_214_residues
MLTLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLG
NGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKSICNGGCPKH
RITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
>Mature_214_residues
MLTLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLG
NGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKSICNGGCPKH
RITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=211, Percent_Identity=99.0521327014218, Blast_Score=440, Evalue=1e-125,
Organism=Escherichia coli, GI48994973, Length=215, Percent_Identity=33.4883720930233, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24513; Mature: 24513

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
NDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNI
HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCEEECCCEECCCEEECCC
NKSELKTMNSVQLTAQKKRISAKCQQCAYKSICNGGCPKHRITKVNNETVSYFCEGYKIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHH
FSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
NDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNI
HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCEEECCCEECCCEEECCC
NKSELKTMNSVQLTAQKKRISAKCQQCAYKSICNGGCPKHRITKVNNETVSYFCEGYKIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHH
FSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]