Click here to switch to the map view.

The map label for this gene is yddA [H]

Identifier: 187734106

GI number: 187734106

Start: 1601840

End: 1603525

Strand: Reverse

Name: yddA [H]

Synonym: SbBS512_E1760

Alternate gene names: 187734106

Gene position: 1603525-1601840 (Counterclockwise)

Preceding gene: 187731705

Following gene: 187733928

Centisome position: 34.74

GC content: 43.12

Gene sequence:

>1686_bases
ATGATAACCATTCCCATTACGTTTTGTATGTTGATAGCAAAGTATCTCTGTCTGCTGAAGCCCTTTTGGCTGCGTAAGAA
TAATAAAACTTCAGTGTTGTTAATCATTATTATCCTCGCAATGATCCTTGGCGTGGTTAAAATTCAGGTCTGGTTAAACG
ACTGGAATAATGATTTTTTCAATGCGCTAAGCCAGAAAGAAACCGATAAGCTTTGGCAGCTTGTTCTTTGGTTCCCTGCC
CTGCTGGGGATCTTTGTATTAATATCCGCAAACAAAACATGGTTAATTAAACTACTGACTATTCGCTGGCGCGAATGGTT
AACAGATTACTACCTTAATCGCTGGTTTGCAGATAAAAACTACTACTTCACGCAGATCTACGGCGAGCATAAAAATACAG
ATAACCCTGACCAACGTATCGCTGAAGACATTCTCTTACTGATCAGCAAAACGCTCAGTCTTTCATTTGGCTTCATCCAG
TCACTTAGCATGCTGATCACCTTTACCGTTATTCTTTGGCAAAGCGCGGGTACGCTCTCATTCACTGTTGGTGGAACAGA
ATGGAATATCCAGGGGTATATGGTCTATACCGTCGTGCTCATTGTGATCGGTGGAACTTTATTTACCCATAAGGTTGGTA
AGCGTATTCGTCCGCTTAATGTGGAAAAACAACGTAGCGAAGCGACATTTCGAACTAATCTTGTGCAGCATAATAAGCAG
GCAGAACTGATTGCTCTAAGCAATGCTGAGTCTCTACAACGCCAGGAGTTGCGCGACAATTTTCATACCATTAAAGAGAA
CTGGCATCGTTTAATGAATCGTCAGCGGTGGCTTGATTACTGGCAAAATATTTATTCGCGCTCGCTTAGCGTTCTTCCCT
ACTTTCTGTTATTGCCGCAGTTTATTAGCGGGCAGATCAATCTGGGCGGACTGATGAAATCGCGCCAGGCATTTATGCTA
GTATCGAACAATTTAAGCTGGTTTATTTATAAATATGACGAACTTGCTGAACTGGCTGCGGTTATCGATCGCTTGTATGA
GTTCCATCAACTCACTGAACAGCGCCCTACGAATAAGCCTAAAAATTGCCAACATGCGGTACAAGTGGCTAATGCGAGTA
TTCGTACGCCTGATAATAAGATCATATTAGAGAACTTGAACTTTCATGTTTCGCCAGGCAAATGGCTATTACTGAAAGGC
TACTCTGGTGCGGGAAAAACCACACTGCTTAAAACATTATCCCACTGCTGGCCGTGGTTTAAAGGTGATATTTTTTCTCC
TGCTGACAGTTGGTATGTGTCACAAACACCGTTAATCAAAACCGGCTTACTGAAAGAGATTATTTGTAAAGCACTTCCCC
TGCCCGTAGACGATAAATCGTTGAGCGAAGTACTGCATCAGGTTGGTCTTGGGAAATTGGCTGCGCGTATTCATGACCAC
GATCGCTGGGGAGATATTCTTTCCAGCGGCGAAAAACAACGTATCGCCCTGGCACGATTAATTTTACGACGTCCGAAATG
GATATTTCTTGACGAAACTACCTCTCATCTTGAGGAACAAGAGGCTATCCGCTTACTGCGTTTAGTGCGTGAAAAACTAT
CCACAAGCGGCGTCATTATGGTTACACATCAACCCGGTGTCTGGAACCTGGCCGATGATATTTGTGACATTAGCGCGGTT
TTATAA

Upstream 100 bases:

>100_bases
AATTTCTATATATTTCATATTGTTAAATGATACTTAAATAAATTTCATCAGTAAATCATTGCCATAGATAATCATTGGAT
GGCACAATCAATTTTCGCTA

Downstream 100 bases:

>100_bases
AAACAATAAAAGCCCTGCTGTACGGAGATATAAATAAATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTG
ATGTGGCGCAGGCCGTCGAT

Product: inner membrane ABC transporter ATP-binding protein

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISANKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELRDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLSTSGVIMVTHQPGVWNLADDICDISAV
L

Sequences:

>Translated_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISANKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELRDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLSTSGVIMVTHQPGVWNLADDICDISAV
L
>Mature_561_residues
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPA
LLGIFVLISANKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELRDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFML
VSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKG
YSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLSTSGVIMVTHQPGVWNLADDICDISAV
L

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=523, Percent_Identity=24.8565965583174, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI9945308, Length=516, Percent_Identity=23.2558139534884, Blast_Score=123, Evalue=6e-28,
Organism=Homo sapiens, GI4506341, Length=565, Percent_Identity=21.4159292035398, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI7262393, Length=552, Percent_Identity=22.1014492753623, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI73747915, Length=249, Percent_Identity=24.4979919678715, Blast_Score=70, Evalue=8e-12,
Organism=Homo sapiens, GI73747917, Length=249, Percent_Identity=24.4979919678715, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI1787772, Length=561, Percent_Identity=98.5739750445633, Blast_Score=1127, Evalue=0.0,
Organism=Escherichia coli, GI1786575, Length=363, Percent_Identity=24.7933884297521, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787112, Length=269, Percent_Identity=27.1375464684015, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786654, Length=236, Percent_Identity=26.6949152542373, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786653, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000520, Length=536, Percent_Identity=26.865671641791, Blast_Score=129, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17564250, Length=534, Percent_Identity=26.5917602996255, Blast_Score=128, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17532411, Length=600, Percent_Identity=23.6666666666667, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17532409, Length=533, Percent_Identity=23.827392120075, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI72000518, Length=562, Percent_Identity=24.7330960854093, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17542146, Length=522, Percent_Identity=21.6475095785441, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17558960, Length=184, Percent_Identity=27.7173913043478, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323959, Length=342, Percent_Identity=23.0994152046784, Blast_Score=71, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6320339, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24638550, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638552, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638554, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638546, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638556, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638548, Length=544, Percent_Identity=21.3235294117647, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638558, Length=544, Percent_Identity=21.1397058823529, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24643394, Length=531, Percent_Identity=23.1638418079096, Blast_Score=99, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65056; Mature: 65056

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISANKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELRDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCEECCCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDIFSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCC
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLSTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VTHQPGVWNLADDICDISAVL
EECCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
CEEEHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHH
NALSQKETDKLWQLVLWFPALLGIFVLISANKTWLIKLLTIRWREWLTDYYLNRWFADKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCC
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWQSAGTLS
EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
EEECCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
AELIALSNAESLQRQELRDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
HHCCCCCCCHHHHCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KNCQHAVQVANASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
CHHHHHHHHHCCCEECCCCEEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC
KGDIFSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCC
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLSTSGVIM
HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VTHQPGVWNLADDICDISAVL
EECCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]