| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
Click here to switch to the map view.
The map label for this gene is sorD [H]
Identifier: 187731433
GI number: 187731433
Start: 4230159
End: 4230965
Strand: Reverse
Name: sorD [H]
Synonym: SbBS512_E4523
Alternate gene names: 187731433
Gene position: 4230965-4230159 (Counterclockwise)
Preceding gene: 187730424
Following gene: 187732005
Centisome position: 91.66
GC content: 50.56
Gene sequence:
>807_bases ATGCAAACGTGGTTAAATTTGCAGGATAAAATCATTATTGTCACCGGCGGCGCATCCGGTATTGGTCTGGCGATTGTAGA GGAATTATTAGCACAAGGCGCAAACGTACAGATGGTAGATATTCACGGTGGCGATGGTCAATATGAAGGTCATAAAGGCT ATCAGTTTTGGCCGACCGATATTTCCAGCGCCAAAGAGGTAAATCATACGGTAGCGGAAATTATCCAGCGTTTTGGTCGC ATCGACGGTCTGGTCAATAACGCCGGGGTCAATTTCCCGCGTCTGCTGGTCGATGAGAAAGCGCCTGCCGGGCAGTATGA ACTCAACGAAGCTGCATTCGAAAAAATGGTCAATATCAACCAGAAAGGCGTTTTTCTGATGTCGCAGGCGGTGGCGCGAC AGATGGTCAAACAACATGATGGCGTGATTGTGAATGTTTCCTCAGAAAGTGGACTGGAAGGCTCAGAAGGCCAAAGCTGT TACGCCGCTACCAAAGCCGCGCTTAATAGCTTCACGCGATCCTGGTCGAAAGAATTGGGTAAACACGGTATCCGTGTGGT CGGTATCGCGCTGGGGATTCTGGAAAAAACAGGACTGCGCACGCCGGAATATGAAGAAGCGCTGGCGTGGACGCGCAATA TCACCGTCGAGCAGCTGCGTGAAGGCTATACCAAAAACGCCATTCCTATTGGGCGCGCCGGAAGATTAGCAGAAGTCGCT GATTTTGTTTGTTATCTGCTGTCTGAACGCGCCAGCTATATCACCGGAGTAACCACTAACATTGCGGGCGGCAAAACGCG CGGCTAA
Upstream 100 bases:
>100_bases TAGCAGCACAGCTGAACTATTACTGAAATAAAAATCTTCCCGATGTTTAGCGTAATAAAAATTACGGCGGGGCCCTATTA TCTAAAATCAGGAGTCTGTT
Downstream 100 bases:
>100_bases GGAGGCTTTATGGTCAATGCCATTTTTTGCGCCCACGTCAAATTAGCTTGCGCCATGCTGGAATCGGTTCAGATGGTGTA CGGCGACGCCAGGGTCGAGG
Product: sorbitol-6-phosphate 2-dehydrogenase
Products: NA
Alternate protein names: Glucitol-6-phosphate dehydrogenase; Ketosephosphate reductase [H]
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGGDGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGR IDGLVNNAGVNFPRLLVDEKAPAGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC YAATKAALNSFTRSWSKELGKHGIRVVGIALGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGRLAEVA DFVCYLLSERASYITGVTTNIAGGKTRG
Sequences:
>Translated_268_residues MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGGDGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGR IDGLVNNAGVNFPRLLVDEKAPAGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC YAATKAALNSFTRSWSKELGKHGIRVVGIALGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGRLAEVA DFVCYLLSERASYITGVTTNIAGGKTRG >Mature_268_residues MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGGDGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGR IDGLVNNAGVNFPRLLVDEKAPAGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC YAATKAALNSFTRSWSKELGKHGIRVVGIALGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGRLAEVA DFVCYLLSERASYITGVTTNIAGGKTRG
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=276, Percent_Identity=30.7971014492754, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI40254992, Length=262, Percent_Identity=31.6793893129771, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI10190704, Length=266, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI4758504, Length=193, Percent_Identity=33.160621761658, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=30.4029304029304, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI32483357, Length=267, Percent_Identity=31.0861423220974, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=245, Percent_Identity=29.7959183673469, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=32.5688073394495, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI83715985, Length=183, Percent_Identity=31.6939890710383, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI7705925, Length=264, Percent_Identity=28.030303030303, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI224922801, Length=182, Percent_Identity=34.0659340659341, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI66933014, Length=260, Percent_Identity=28.8461538461538, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=25.7425742574257, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI126723750, Length=270, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031737, Length=269, Percent_Identity=27.8810408921933, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=271, Percent_Identity=33.5793357933579, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87082100, Length=269, Percent_Identity=31.2267657992565, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1790717, Length=271, Percent_Identity=28.7822878228782, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI87082160, Length=266, Percent_Identity=28.1954887218045, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789057, Length=273, Percent_Identity=27.4725274725275, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788459, Length=206, Percent_Identity=33.495145631068, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789208, Length=265, Percent_Identity=27.1698113207547, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367175, Length=267, Percent_Identity=32.2097378277154, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786812, Length=267, Percent_Identity=28.0898876404494, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787905, Length=269, Percent_Identity=28.2527881040892, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789378, Length=280, Percent_Identity=27.8571428571429, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=26.171875, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787820, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=33.5849056603774, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17555706, Length=267, Percent_Identity=32.5842696629214, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17561402, Length=271, Percent_Identity=30.6273062730627, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=275, Percent_Identity=29.0909090909091, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=276, Percent_Identity=29.3478260869565, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115534694, Length=273, Percent_Identity=29.3040293040293, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562990, Length=278, Percent_Identity=30.5755395683453, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=277, Percent_Identity=28.5198555956679, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=29.1044776119403, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=28.3088235294118, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562910, Length=279, Percent_Identity=27.5985663082437, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.9473684210526, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538182, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562904, Length=277, Percent_Identity=29.6028880866426, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=30.2583025830258, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17559104, Length=276, Percent_Identity=26.4492753623188, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71994604, Length=266, Percent_Identity=26.6917293233083, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17560332, Length=280, Percent_Identity=28.9285714285714, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17538486, Length=275, Percent_Identity=28.3636363636364, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17531453, Length=276, Percent_Identity=28.2608695652174, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565030, Length=277, Percent_Identity=29.2418772563177, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17563726, Length=271, Percent_Identity=27.3062730627306, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193204405, Length=279, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560676, Length=277, Percent_Identity=25.6317689530686, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=27.7372262773723, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=274, Percent_Identity=25.5474452554745, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567345, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508651, Length=211, Percent_Identity=24.6445497630332, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=273, Percent_Identity=26.7399267399267, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=263, Percent_Identity=27.7566539923954, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=195, Percent_Identity=27.1794871794872, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=267, Percent_Identity=32.9588014981273, Blast_Score=124, Evalue=7e-29, Organism=Drosophila melanogaster, GI24639444, Length=265, Percent_Identity=32.8301886792453, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24643142, Length=266, Percent_Identity=31.9548872180451, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI21357041, Length=268, Percent_Identity=29.8507462686567, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI21355319, Length=276, Percent_Identity=29.3478260869565, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI28571526, Length=281, Percent_Identity=29.5373665480427, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI17737361, Length=209, Percent_Identity=32.5358851674641, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24644339, Length=277, Percent_Identity=26.3537906137184, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24644337, Length=223, Percent_Identity=30.4932735426009, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=30.8823529411765, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21356301, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221331218, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665247, Length=205, Percent_Identity=30.7317073170732, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI221331216, Length=202, Percent_Identity=30.1980198019802, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.140 [H]
Molecular weight: Translated: 29025; Mature: 29025
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGGDGQYEGHKGYQFWPTD CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCC ISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAPAGQYELNEAAFEKMVNIN CCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHCCC QKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELG CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KHGIRVVGIALGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGRLAEVA HCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHH DFVCYLLSERASYITGVTTNIAGGKTRG HHHHHHHHHHHHHHHCCEEECCCCCCCC >Mature Secondary Structure MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGGDGQYEGHKGYQFWPTD CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCC ISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAPAGQYELNEAAFEKMVNIN CCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCHHEECCCCCCCCCHHHHHHHHHHHCCC QKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELG CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KHGIRVVGIALGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPIGRAGRLAEVA HCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHH DFVCYLLSERASYITGVTTNIAGGKTRG HHHHHHHHHHHHHHHCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7947968; 7652212 [H]