Click here to switch to the map view.

The map label for this gene is insD1 [C]

Identifier: 187730597

GI number: 187730597

Start: 1761711

End: 1761977

Strand: Reverse

Name: insD1 [C]

Synonym: SbBS512_E1920

Alternate gene names: 187730597

Gene position: 1761977-1761711 (Counterclockwise)

Preceding gene: 187733910

Following gene: 187734150

Centisome position: 38.17

GC content: 50.94

Gene sequence:

>267_bases
GTGTGCCACTTCAAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGAT
AAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATT
ATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTA
AGTGATAACAGATGTCTGGAAATATAG

Upstream 100 bases:

>100_bases
GATTCGCGTTTAAACTCTGCGCTAAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTC
TGTTCAGGTGGCCAAATTCA

Downstream 100 bases:

>100_bases
GGGCAAATCCACTGCGGCACAGATCAGCTCGGAAAGTTCGTTAAGTGCATCCAGATCATCAGCGTAAAAAGCCACGTCAT
ACAGACTTCGGATTGCTCTG

Product: IS2 ORF2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MCHFKPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGL
SDNRCLEI

Sequences:

>Translated_88_residues
MCHFKPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGL
SDNRCLEI
>Mature_88_residues
MCHFKPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGL
SDNRCLEI

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,
Organism=Escherichia coli, GI1789424, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,
Organism=Escherichia coli, GI1789224, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,
Organism=Escherichia coli, GI1788305, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,
Organism=Escherichia coli, GI1787669, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,
Organism=Escherichia coli, GI1786558, Length=88, Percent_Identity=95.4545454545455, Blast_Score=179, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 10079; Mature: 10079

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHFKPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
SALGYRSPREYLRQRACNGLSDNRCLEI
CCCCCCCHHHHHHHHHCCCCCCCCEECC
>Mature Secondary Structure
MCHFKPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
SALGYRSPREYLRQRACNGLSDNRCLEI
CCCCCCCHHHHHHHHHCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA