| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is 187730045
Identifier: 187730045
GI number: 187730045
Start: 1772062
End: 1772643
Strand: Direct
Name: 187730045
Synonym: SbBS512_E1937
Alternate gene names: NA
Gene position: 1772062-1772643 (Clockwise)
Preceding gene: 187733805
Following gene: 187730613
Centisome position: 38.39
GC content: 59.62
Gene sequence:
>582_bases GTGAGCGCAGAACTCATGCGGCTACTGAGCAATATCATCCGCACCGGGATCATCTCTGAAGTTGATGAGAAGTCCTGGCG CGTGCGCGTTCGCAGCGGCGAACTGGAAACAGGTTGGCTGCGCTGGAACACCACTCGCGCGGGAGCCTTCAATGTGTGGC TGCCGCCATCACCAGGCGAACAGGTGGTAATTGCCTGCATTGGCGGCAACCCGGAAACCGCCATGATAATTGGCAGCCTG TGGAGTGATGCCATTCCGGCCCCCGGCAAAAGCCTGAAAGAAATCGTGGTCAGCGCGCCGGATGGCGCGGTGTTCCGCTA CGACGCGGACGCAGGCGCACTGAGCGCCAGCGGCATGAAAACAGCCACCCTGCAGGCATCCGTCAGCGTGACACTGGATA CGCCCGTCGTGGAATGCACAGACCTTCTGAGAACGGCGACGCTTGACGTCACAAAAGGGGGAAAGATGAGCGGCAATATC ACGCACAGCGGCGGCAATTTCACCTCAAACGGCATCACAGTGCATACGCATAAACACGGTGGCGTTAAAGGTGGCAGCGA TTCGACAGGAGGCCCGCAGTGA
Upstream 100 bases:
>100_bases TTTTCACCGATTACCCGGTACGTGAGCTGCTGGGTATCAGCCAGGCAGATGAGCGCCCGATTTATAACACGGTGCTGGGC CGGATTGCAGAGGCTGTACG
Downstream 100 bases:
>100_bases CAACCCGCTACACAGGAATGAACCCGGACGGAACGGGAAACCTGAACGATATGGAGCACCTGAAACAGTCAGTCAGGGAC ATCCTGACCACCCCGCTGGC
Product: baseplate assembly protein V
Products: NA
Alternate protein names: Baseplate Assembly Protein V; Phage Baseplate Assembly Protein; Phage-Related Baseplate Protein; Baseplate Assembly Protein GpV; Phage-Related Baseplate Assembly Protein; Phage-Related Baseplate Assembly Protein V; Baseplate Assembly Protein; Phage P2-Like Baseplate Assembly Protein; Phage P2 Baseplate Assembly GpV Protein; Bacteriophage Baseplate Assembly Protein V; Prophage LambdaW5 Baseplate Assembly Protein V; Baseplate Assembly Protein V Prophage; Prophage Baseplate Assembly Protein; Phage P2 Baseplate Assembly GpV-Like Protein; Phage Baseplate Assembly-Like Protein; Bacteriophage P2 Baseplate Assembly Protein GPV
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTTRAGAFNVWLPPSPGEQVVIACIGGNPETAMIIGSL WSDAIPAPGKSLKEIVVSAPDGAVFRYDADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNI THSGGNFTSNGITVHTHKHGGVKGGSDSTGGPQ
Sequences:
>Translated_193_residues MSAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTTRAGAFNVWLPPSPGEQVVIACIGGNPETAMIIGSL WSDAIPAPGKSLKEIVVSAPDGAVFRYDADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNI THSGGNFTSNGITVHTHKHGGVKGGSDSTGGPQ >Mature_192_residues SAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTTRAGAFNVWLPPSPGEQVVIACIGGNPETAMIIGSLW SDAIPAPGKSLKEIVVSAPDGAVFRYDADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNIT HSGGNFTSNGITVHTHKHGGVKGGSDSTGGPQ
Specific function: Unknown
COG id: COG4540
COG function: function code R; Phage P2 baseplate assembly protein gpV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20160; Mature: 20029
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTTRAGAFNVWLPPSPGE CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC QVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDGAVFRYDADAGALSASGMK EEEEEEECCCCCEEEEEEEHHCCCCCCCCCCHHHHEEECCCCEEEEEECCCCCEECCCCE TATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNITHSGGNFTSNGITVHTHKHG EEEEEEEEEEEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCEECCCEEEEEECCC GVKGGSDSTGGPQ CCCCCCCCCCCCC >Mature Secondary Structure SAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTTRAGAFNVWLPPSPGE CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC QVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDGAVFRYDADAGALSASGMK EEEEEEECCCCCEEEEEEEHHCCCCCCCCCCHHHHEEECCCCEEEEEECCCCCEECCCCE TATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNITHSGGNFTSNGITVHTHKHG EEEEEEEEEEEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCEECCCEEEEEECCC GVKGGSDSTGGPQ CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA