| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736595
Identifier: 187736595
GI number: 187736595
Start: 2579834
End: 2580475
Strand: Reverse
Name: 187736595
Synonym: Amuc_2117
Alternate gene names: NA
Gene position: 2580475-2579834 (Counterclockwise)
Preceding gene: 187736596
Following gene: 187736593
Centisome position: 96.86
GC content: 30.06
Gene sequence:
>642_bases ATGGATGTGCAATCTTTTTTAGAAAACCCTTGGACCTCTGGGATAGGGGGAGGGATTATTAGCGGATTTATAGTATTTTA TGTAACAAGATGGCTTTTGCAAAGGAAGGATAAGAGGAATTATATCAATTCAGTACATAGTGCTAATAAACAAGTTATTG ATTTTTTAAAAGCATATGTGGTAGATAAAGGATTGCCGGATTATCAAATAGTTAACGCTATTATTTCTGCTGCAGCCCGT GAATTTTCTGTGAAAAAGGAGGAATTGTATGATGTGGTTGTGGTCTGTGAAGAATTAATAAAAGAAATAATAGGTAATGT TTATGTTTCTGGTGATCAAAAGCAGAAATATTTAGAAGATTTAAGTTTGTATATGGAAAAAGTGAAAAAGGCTCGATGTA GTATAAAATCATTAGATTTAAATGATTTAGAGGATCTATTGGATGAGTCTTTTCATTTGAATGTTAGCCTCATGTTAGGA GGAGTATCGGCTTTGTTTGGATTTATTATACCATTTTTACCTCGTTTGTTTAGATTTTTTAAAGAATCATACATTTTAAC AATTACAGTGATTATGATTTGTTTGGTTCTTGTTATTTTTTATTTGATATTTTTAAATAAAGGGAAAAAGCAACATAAAT AG
Upstream 100 bases:
>100_bases GGTGGGGAAAGTAATGTATCCTATATATTTTTATACAAAAATTTGGTATTTGGAAAATACTTGTTGACATTTTTTATTAT CTGACCTTTCCTTGAAAGAT
Downstream 100 bases:
>100_bases AAAAATATTTTCCATGGATTATCTTATGGAGTTATTTTTTACTTATATATTTTTACTGCAATTACAAATGACGGCAATCT TGATGCCTTTCATCTGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MDVQSFLENPWTSGIGGGIISGFIVFYVTRWLLQRKDKRNYINSVHSANKQVIDFLKAYVVDKGLPDYQIVNAIISAAAR EFSVKKEELYDVVVVCEELIKEIIGNVYVSGDQKQKYLEDLSLYMEKVKKARCSIKSLDLNDLEDLLDESFHLNVSLMLG GVSALFGFIIPFLPRLFRFFKESYILTITVIMICLVLVIFYLIFLNKGKKQHK
Sequences:
>Translated_213_residues MDVQSFLENPWTSGIGGGIISGFIVFYVTRWLLQRKDKRNYINSVHSANKQVIDFLKAYVVDKGLPDYQIVNAIISAAAR EFSVKKEELYDVVVVCEELIKEIIGNVYVSGDQKQKYLEDLSLYMEKVKKARCSIKSLDLNDLEDLLDESFHLNVSLMLG GVSALFGFIIPFLPRLFRFFKESYILTITVIMICLVLVIFYLIFLNKGKKQHK >Mature_213_residues MDVQSFLENPWTSGIGGGIISGFIVFYVTRWLLQRKDKRNYINSVHSANKQVIDFLKAYVVDKGLPDYQIVNAIISAAAR EFSVKKEELYDVVVVCEELIKEIIGNVYVSGDQKQKYLEDLSLYMEKVKKARCSIKSLDLNDLEDLLDESFHLNVSLMLG GVSALFGFIIPFLPRLFRFFKESYILTITVIMICLVLVIFYLIFLNKGKKQHK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24464; Mature: 24464
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVQSFLENPWTSGIGGGIISGFIVFYVTRWLLQRKDKRNYINSVHSANKQVIDFLKAYV CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDKGLPDYQIVNAIISAAAREFSVKKEELYDVVVVCEELIKEIIGNVYVSGDQKQKYLED HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LSLYMEKVKKARCSIKSLDLNDLEDLLDESFHLNVSLMLGGVSALFGFIIPFLPRLFRFF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KESYILTITVIMICLVLVIFYLIFLNKGKKQHK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MDVQSFLENPWTSGIGGGIISGFIVFYVTRWLLQRKDKRNYINSVHSANKQVIDFLKAYV CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDKGLPDYQIVNAIISAAAREFSVKKEELYDVVVVCEELIKEIIGNVYVSGDQKQKYLED HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LSLYMEKVKKARCSIKSLDLNDLEDLLDESFHLNVSLMLGGVSALFGFIIPFLPRLFRFF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KESYILTITVIMICLVLVIFYLIFLNKGKKQHK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA