| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is pyrE [H]
Identifier: 187736588
GI number: 187736588
Start: 2570344
End: 2570913
Strand: Reverse
Name: pyrE [H]
Synonym: Amuc_2110
Alternate gene names: 187736588
Gene position: 2570913-2570344 (Counterclockwise)
Preceding gene: 187736592
Following gene: 187736587
Centisome position: 96.5
GC content: 59.3
Gene sequence:
>570_bases ATGAGCGAACAATACGATCTTCTTAAAAGCATTCTTTTGGAAAAATCCGTGCGTACGGGAACTTTTACACTGGCTTCCGG CAAGGTGTCCGATTTGTATGTGGACTGCCGCATGACAGCCCTGGACCCCGTAGGAGCCACTCTGGTGGGCGCTCTGGGCT GGAAGCTGGTGAAGGAGGATATTTTGCCCCGTTTCCCGGAGGTGGCGGCCATCGGCGGCATGACCATGGGGGCGGACCCT ATTTCCCTGGCCGTCGGCATGACCAGCGCTCTGGAAGGGGCGGAAAAGACGCTTCAGGTGTTCACCGTGCGCAAAGAACC GAAGGACCATGGCCGCGGCCGCCGTATTGAAGGCAATTTCCAGGCCGGGGATACCGTGGTCGTGGTGGATGACGTTATCA CGACGGGAGGCTCTACGCTGAAGGCTATTGATGCCATTGAGGCGGAAGGGGGCAGGGTTGCCGCCGCCCTGGTGCTGCTG GACCGAGAGGAAGGCGGACGCCAGGCGATTGAGGAACGCGGCATTCCCGTTTACCCGCTGTACACCAGGACTTCCTTGTT GGGCCATTAA
Upstream 100 bases:
>100_bases GCCTGTCCTCCTTTTTGTCAAGATTTGCATGCTGTTATCCGTTGCTTATTCCGGGGGTATCTGTTATACACGGCGAACCA TTTCATTCATCCCTATTTTC
Downstream 100 bases:
>100_bases TCTTTTTTCGTCCATGCTCCCTGCCCTGATCGGCATAAGCGGCCATGAAGTGGGCGCGGAGGAGGAGGCTGCCATCCGGC GTTTGCAGCCGGCCGGATTC
Product: orotate phosphoribosyltransferase
Products: NA
Alternate protein names: OPRT; OPRTase [H]
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MSEQYDLLKSILLEKSVRTGTFTLASGKVSDLYVDCRMTALDPVGATLVGALGWKLVKEDILPRFPEVAAIGGMTMGADP ISLAVGMTSALEGAEKTLQVFTVRKEPKDHGRGRRIEGNFQAGDTVVVVDDVITTGGSTLKAIDAIEAEGGRVAAALVLL DREEGGRQAIEERGIPVYPLYTRTSLLGH
Sequences:
>Translated_189_residues MSEQYDLLKSILLEKSVRTGTFTLASGKVSDLYVDCRMTALDPVGATLVGALGWKLVKEDILPRFPEVAAIGGMTMGADP ISLAVGMTSALEGAEKTLQVFTVRKEPKDHGRGRRIEGNFQAGDTVVVVDDVITTGGSTLKAIDAIEAEGGRVAAALVLL DREEGGRQAIEERGIPVYPLYTRTSLLGH >Mature_188_residues SEQYDLLKSILLEKSVRTGTFTLASGKVSDLYVDCRMTALDPVGATLVGALGWKLVKEDILPRFPEVAAIGGMTMGADPI SLAVGMTSALEGAEKTLQVFTVRKEPKDHGRGRRIEGNFQAGDTVVVVDDVITTGGSTLKAIDAIEAEGGRVAAALVLLD REEGGRQAIEERGIPVYPLYTRTSLLGH
Specific function: Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) [H]
COG id: COG0461
COG function: function code F; Orotate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily [H]
Homologues:
Organism=Homo sapiens, GI4507835, Length=173, Percent_Identity=30.0578034682081, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17554964, Length=182, Percent_Identity=28.021978021978, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17508631, Length=186, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI17933654, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004467 - InterPro: IPR023031 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.4.2.10 [H]
Molecular weight: Translated: 20129; Mature: 19998
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQYDLLKSILLEKSVRTGTFTLASGKVSDLYVDCRMTALDPVGATLVGALGWKLVKED CCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH ILPRFPEVAAIGGMTMGADPISLAVGMTSALEGAEKTLQVFTVRKEPKDHGRGRRIEGNF HCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEECCCC QAGDTVVVVDDVITTGGSTLKAIDAIEAEGGRVAAALVLLDREEGGRQAIEERGIPVYPL CCCCEEEEEECEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHCCCCEEEH YTRTSLLGH HHHHHHCCC >Mature Secondary Structure SEQYDLLKSILLEKSVRTGTFTLASGKVSDLYVDCRMTALDPVGATLVGALGWKLVKED CHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHH ILPRFPEVAAIGGMTMGADPISLAVGMTSALEGAEKTLQVFTVRKEPKDHGRGRRIEGNF HCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEECCCC QAGDTVVVVDDVITTGGSTLKAIDAIEAEGGRVAAALVLLDREEGGRQAIEERGIPVYPL CCCCEEEEEECEECCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHCCCCEEEH YTRTSLLGH HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]