| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735096
Identifier: 187735096
GI number: 187735096
Start: 699073
End: 700455
Strand: Reverse
Name: 187735096
Synonym: Amuc_0590
Alternate gene names: NA
Gene position: 700455-699073 (Counterclockwise)
Preceding gene: 187735099
Following gene: 187735095
Centisome position: 26.29
GC content: 58.5
Gene sequence:
>1383_bases ATGAATATTCAACCCAAAATCACGCCTGTGCTGGACCCCGGCTTCGTGCCGGCCGTTCTTTGGAATCAAGCTTTTGAGGC CAAAGCCGCCGCCGATCCCGCTTCTCATCAAGTGGATATCGCTCTGACCCGCAATGACGGGACCTGTTTCCGCTGGTCCG GCAAGCTTCTTCCCCATACCGGAGAAAACATTGCCCTGAATGAGACCTATGTGGAGCGCATTGTGAAATTCCTGCTGTGG CAGAAGGGCGGCAATATCATCCTCGTCGCCGGGGATGACGCTATTGCGGACATGCTGGCCTCCCGCTATTGCAAAGGCGG TATCCGCGAATTCGACTGGGATTTCATCGGCAAGAAGATTTACGGCTCCCCGATTGAAGTGAAAAAGGTTTCCGTGGAAG AACTTCCCGAGGAATACTCCGGCTCCATGACACTGGGCCGCAACCTGGACGGCTGCCGCATTGGTTTTGACCTGGGCGGT TCCGACCGCAAATGCGCCGCCGTGGTGAATGGGGAAGTGGTTTATTCCGAGGAAGTGGTCTGGGACCCTTACTTCCAGAA GGACCCCCAGTATCACATTGACGGAATTCAGGATTCTCTGGAACGCGCCGCCGCTCATCTCCCCCGGGTGGACGCCATCG GCGGATCCTCCGCCGGCGTGATCATCAACAGTGAAGTACGCACTTCCTCCCTGTTCCGCGGCGTCAGCCAGGAAGACATT GAAAAGACTCTCGGCAAGGTATTCCGCACCCTCCAGAAGGAAAAATGGAACAACATTCCCTTTGAAGTGGTGAATGACGG TGAAGTCACCGCCCTCGCAGGGGCCATGGGCATGAACGATAACGCCGTGCTCGGCGTGGCCATGGGCACCTCCGAGGCCG CCGGCTACGTGGATCCGGAAGGCCACATCAAGCCCTGGCTGAATGAACTGGCGTTCGCCCCTGTGGACTACTCGGAGGAA GGCGGAGTGGACGAATGGTCCAAGGATATGGGCGTAGGCGCCCTTTACTTCTCCCAGCAGGCTGTGGCCCGCCTGGCCCC CCGCGCCGGTTTCCAGTTTGAAGGAATGCCCTTCCCGGAACAGCTTAAAAAGGTTCAGGCCGCCATGGCGGAAGGCGACG AACGCGCCCGCAAGATTTATGAAACCATCGGCGTGCACTTCGGCTATGCCATTGCCCATTACGCCAGGTTCTATGATATC CGCAACCTGCTCTTCCTGGGCCGTGTGGCTTCCGGAGACGGCGGCCAGATCATCATTGACAAGGCGGAAGAAGTGCTGCG CACCGAATTCCCCGAGCTGAAGATCCAGCTCCGCGTGCCGGATGAAAAGACCAAGCGCCACGGACAGGCCGTAGCTGCCG CTTCCCTTCCGGCTCTCTCCTGA
Upstream 100 bases:
>100_bases TGAGCTATCTCCCCTCATTCCGCAAAAAAAATCATCAGGAAAGGGAATGAATACTTTTCAAGGAAAAGCGGGTATGCTAC GTTTCCAACGGATTATCGCC
Downstream 100 bases:
>100_bases CGGGATTAATCAAATTTGCGGGAGGGGCCCTGGCTGGGGGCCCTCCCTGCTCATATTCGGAGGGGGGGGACGGCCAATCC GCGCCGTTTTTCCTCCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MNIQPKITPVLDPGFVPAVLWNQAFEAKAAADPASHQVDIALTRNDGTCFRWSGKLLPHTGENIALNETYVERIVKFLLW QKGGNIILVAGDDAIADMLASRYCKGGIREFDWDFIGKKIYGSPIEVKKVSVEELPEEYSGSMTLGRNLDGCRIGFDLGG SDRKCAAVVNGEVVYSEEVVWDPYFQKDPQYHIDGIQDSLERAAAHLPRVDAIGGSSAGVIINSEVRTSSLFRGVSQEDI EKTLGKVFRTLQKEKWNNIPFEVVNDGEVTALAGAMGMNDNAVLGVAMGTSEAAGYVDPEGHIKPWLNELAFAPVDYSEE GGVDEWSKDMGVGALYFSQQAVARLAPRAGFQFEGMPFPEQLKKVQAAMAEGDERARKIYETIGVHFGYAIAHYARFYDI RNLLFLGRVASGDGGQIIIDKAEEVLRTEFPELKIQLRVPDEKTKRHGQAVAAASLPALS
Sequences:
>Translated_460_residues MNIQPKITPVLDPGFVPAVLWNQAFEAKAAADPASHQVDIALTRNDGTCFRWSGKLLPHTGENIALNETYVERIVKFLLW QKGGNIILVAGDDAIADMLASRYCKGGIREFDWDFIGKKIYGSPIEVKKVSVEELPEEYSGSMTLGRNLDGCRIGFDLGG SDRKCAAVVNGEVVYSEEVVWDPYFQKDPQYHIDGIQDSLERAAAHLPRVDAIGGSSAGVIINSEVRTSSLFRGVSQEDI EKTLGKVFRTLQKEKWNNIPFEVVNDGEVTALAGAMGMNDNAVLGVAMGTSEAAGYVDPEGHIKPWLNELAFAPVDYSEE GGVDEWSKDMGVGALYFSQQAVARLAPRAGFQFEGMPFPEQLKKVQAAMAEGDERARKIYETIGVHFGYAIAHYARFYDI RNLLFLGRVASGDGGQIIIDKAEEVLRTEFPELKIQLRVPDEKTKRHGQAVAAASLPALS >Mature_460_residues MNIQPKITPVLDPGFVPAVLWNQAFEAKAAADPASHQVDIALTRNDGTCFRWSGKLLPHTGENIALNETYVERIVKFLLW QKGGNIILVAGDDAIADMLASRYCKGGIREFDWDFIGKKIYGSPIEVKKVSVEELPEEYSGSMTLGRNLDGCRIGFDLGG SDRKCAAVVNGEVVYSEEVVWDPYFQKDPQYHIDGIQDSLERAAAHLPRVDAIGGSSAGVIINSEVRTSSLFRGVSQEDI EKTLGKVFRTLQKEKWNNIPFEVVNDGEVTALAGAMGMNDNAVLGVAMGTSEAAGYVDPEGHIKPWLNELAFAPVDYSEE GGVDEWSKDMGVGALYFSQQAVARLAPRAGFQFEGMPFPEQLKKVQAAMAEGDERARKIYETIGVHFGYAIAHYARFYDI RNLLFLGRVASGDGGQIIIDKAEEVLRTEFPELKIQLRVPDEKTKRHGQAVAAASLPALS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50447; Mature: 50447
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIQPKITPVLDPGFVPAVLWNQAFEAKAAADPASHQVDIALTRNDGTCFRWSGKLLPHT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCC GENIALNETYVERIVKFLLWQKGGNIILVAGDDAIADMLASRYCKGGIREFDWDFIGKKI CCCEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCHHH YGSPIEVKKVSVEELPEEYSGSMTLGRNLDGCRIGFDLGGSDRKCAAVVNGEVVYSEEVV CCCCCEEEECCHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCEEEEEECCEEEEECCEE WDPYFQKDPQYHIDGIQDSLERAAAHLPRVDAIGGSSAGVIINSEVRTSSLFRGVSQEDI ECCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHH EKTLGKVFRTLQKEKWNNIPFEVVNDGEVTALAGAMGMNDNAVLGVAMGTSEAAGYVDPE HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEHHCCCCCCEEEEEEECCCCCCCCCCCC GHIKPWLNELAFAPVDYSEEGGVDEWSKDMGVGALYFSQQAVARLAPRAGFQFEGMPFPE CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHH QLKKVQAAMAEGDERARKIYETIGVHFGYAIAHYARFYDIRNLLFLGRVASGDGGQIIID HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEH KAEEVLRTEFPELKIQLRVPDEKTKRHGQAVAAASLPALS HHHHHHHCCCCCEEEEEECCCHHHHHCCCEEHHCCCCCCC >Mature Secondary Structure MNIQPKITPVLDPGFVPAVLWNQAFEAKAAADPASHQVDIALTRNDGTCFRWSGKLLPHT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCC GENIALNETYVERIVKFLLWQKGGNIILVAGDDAIADMLASRYCKGGIREFDWDFIGKKI CCCEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCHHH YGSPIEVKKVSVEELPEEYSGSMTLGRNLDGCRIGFDLGGSDRKCAAVVNGEVVYSEEVV CCCCCEEEECCHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCEEEEEECCEEEEECCEE WDPYFQKDPQYHIDGIQDSLERAAAHLPRVDAIGGSSAGVIINSEVRTSSLFRGVSQEDI ECCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHH EKTLGKVFRTLQKEKWNNIPFEVVNDGEVTALAGAMGMNDNAVLGVAMGTSEAAGYVDPE HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEHHCCCCCCEEEEEEECCCCCCCCCCCC GHIKPWLNELAFAPVDYSEEGGVDEWSKDMGVGALYFSQQAVARLAPRAGFQFEGMPFPE CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHH QLKKVQAAMAEGDERARKIYETIGVHFGYAIAHYARFYDIRNLLFLGRVASGDGGQIIID HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEH KAEEVLRTEFPELKIQLRVPDEKTKRHGQAVAAASLPALS HHHHHHHCCCCCEEEEEECCCHHHHHCCCEEHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA