Click here to switch to the map view.

The map label for this gene is comFC [H]

Identifier: 187735075

GI number: 187735075

Start: 668164

End: 668913

Strand: Reverse

Name: comFC [H]

Synonym: Amuc_0569

Alternate gene names: 187735075

Gene position: 668913-668164 (Counterclockwise)

Preceding gene: 187735076

Following gene: 187735074

Centisome position: 25.11

GC content: 62.0

Gene sequence:

>750_bases
ATGCTGAGGTCGGTTGTCAGGGAATGGCTTTCCTGGGTGTATCCTTTTGTCTGCGAGTTATGCGGCCGCGGCGGCCTGGA
TGGCTGCCATGTTTGCCCGGACTGCCGCGGAAGTTTCGTGCCTGTCGAGCCTCCCTTCTGTGCCGTCTGCGGGGAACCGG
CGGAGGGTTCCTTCATCCCGTCCGGATTATGCCGTCGCTGCGCGGTAGCTCTCCCCTCTTTTGAGGAAGCCCGTGCCGTG
TATGTGAATACGGGATCATTGCGGGATCTTCTGCTGGCTTTCAAATATGGGGGAGCCGTTCATCTGGCCGGCTCCTTCGC
GCAGATGATGGCAGAGGCAGTGCGTGGAAATCCTCACTGGTTCGGCGGGAAAAAACGCCTGATCGTTCCCGTGCCCATGC
ACCGCGGCAAACAGGCTCGAAGGGGGTACAACCAGGCGCAGGAACTGGCGGTTCTGCTGGGAGAGGAACTGGGCTGGCCG
TATGCCGGCGTGCTGAAACGCCTGCCGGATACGCTTCCCCAGGCCAGCTTGTCGCGGGAGCAGCGGCTCAGACATGCCCG
TAAAATTTATGCGGCGGATGAAAAAAGGATGAAACGCAGCCCCGTCAGGGGCAGGGATGTGCTGCTGGTGGATGATGTTT
TTACGACCGGAGCCACGGCAGACTCCTGCGCCCGTCTGCTCCTCCGCTCCGGGGCTGCTTCCGTCTGCGTGCTGACGCTG
GCGCGGACGCATCATGCATGGCGCGGCTGA

Upstream 100 bases:

>100_bases
GACAAGCTTCTGGAAGAGATGCCGGAAGAGGAGGGCGCCGATTCCCCCGATGGGAAGTGCGAACGATAGGAGCCTCTTTC
AACTTTCTGCCGTGCGGGGA

Downstream 100 bases:

>100_bases
ACCGGAATTTTCTTTCAGCCCGCCTGTTTCCTTTTTACAATGGCAGGCATGAATCCGGAGCTGATGTTTCATACGGAAGA
TGAAGTCATGTTTTATGATA

Product: competence protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MLRSVVREWLSWVYPFVCELCGRGGLDGCHVCPDCRGSFVPVEPPFCAVCGEPAEGSFIPSGLCRRCAVALPSFEEARAV
YVNTGSLRDLLLAFKYGGAVHLAGSFAQMMAEAVRGNPHWFGGKKRLIVPVPMHRGKQARRGYNQAQELAVLLGEELGWP
YAGVLKRLPDTLPQASLSREQRLRHARKIYAADEKRMKRSPVRGRDVLLVDDVFTTGATADSCARLLLRSGAASVCVLTL
ARTHHAWRG

Sequences:

>Translated_249_residues
MLRSVVREWLSWVYPFVCELCGRGGLDGCHVCPDCRGSFVPVEPPFCAVCGEPAEGSFIPSGLCRRCAVALPSFEEARAV
YVNTGSLRDLLLAFKYGGAVHLAGSFAQMMAEAVRGNPHWFGGKKRLIVPVPMHRGKQARRGYNQAQELAVLLGEELGWP
YAGVLKRLPDTLPQASLSREQRLRHARKIYAADEKRMKRSPVRGRDVLLVDDVFTTGATADSCARLLLRSGAASVCVLTL
ARTHHAWRG
>Mature_249_residues
MLRSVVREWLSWVYPFVCELCGRGGLDGCHVCPDCRGSFVPVEPPFCAVCGEPAEGSFIPSGLCRRCAVALPSFEEARAV
YVNTGSLRDLLLAFKYGGAVHLAGSFAQMMAEAVRGNPHWFGGKKRLIVPVPMHRGKQARRGYNQAQELAVLLGEELGWP
YAGVLKRLPDTLPQASLSREQRLRHARKIYAADEKRMKRSPVRGRDVLLVDDVFTTGATADSCARLLLRSGAASVCVLTL
ARTHHAWRG

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=236, Percent_Identity=30.5084745762712, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27375; Mature: 27375

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVVREWLSWVYPFVCELCGRGGLDGCHVCPDCRGSFVPVEPPFCAVCGEPAEGSFIP
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCH
SGLCRRCAVALPSFEEARAVYVNTGSLRDLLLAFKYGGAVHLAGSFAQMMAEAVRGNPHW
HHHHHHHHHHCCCHHHCCEEEEECCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCE
FGGKKRLIVPVPMHRGKQARRGYNQAQELAVLLGEELGWPYAGVLKRLPDTLPQASLSRE
ECCCEEEEEECCCCCCHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
QRLRHARKIYAADEKRMKRSPVRGRDVLLVDDVFTTGATADSCARLLLRSGAASVCVLTL
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHCCCHHHHHHHH
ARTHHAWRG
HHHHHCCCC
>Mature Secondary Structure
MLRSVVREWLSWVYPFVCELCGRGGLDGCHVCPDCRGSFVPVEPPFCAVCGEPAEGSFIP
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCH
SGLCRRCAVALPSFEEARAVYVNTGSLRDLLLAFKYGGAVHLAGSFAQMMAEAVRGNPHW
HHHHHHHHHHCCCHHHCCEEEEECCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCE
FGGKKRLIVPVPMHRGKQARRGYNQAQELAVLLGEELGWPYAGVLKRLPDTLPQASLSRE
ECCCEEEEEECCCCCCHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
QRLRHARKIYAADEKRMKRSPVRGRDVLLVDDVFTTGATADSCARLLLRSGAASVCVLTL
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHCCCHHHHHHHH
ARTHHAWRG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8412657; 8045879; 9384377 [H]