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The map label for this gene is sufB [H]

Identifier: 187734995

GI number: 187734995

Start: 575060

End: 576496

Strand: Direct

Name: sufB [H]

Synonym: Amuc_0488

Alternate gene names: 187734995

Gene position: 575060-576496 (Clockwise)

Preceding gene: 187734994

Following gene: 187734996

Centisome position: 21.59

GC content: 54.84

Gene sequence:

>1437_bases
ATGAGCGATACACCTGACATGTCAGAGAACGGGAACACACAGAACCTGTTTGACTTCGACCGGAGCAAGGGAAACTTCTC
CTTCCCGGAACGCCATAAATTTGATGCCGGATACGGCCTGACGGAGGCCACTATTGACTACATCTGCGACGTCAAGGACG
ACCCGGAATGGGTGCGCCAGTTCCGCAAAAACGCGCTTGCCGTTTTTGAAAGCAAGCCCATGCCCACCCACTGGGCTTCT
CCGGATATTAAAAAAATAGACTTCTCCCAAATCCGCTACTACCTCTCCGACGGAGAACGGCCCAAACGAAGCTGGGACGA
CGTGCCGGAGGATGTAAAGCGCACCTTCGAACGCCTGGGCGTTCCGGAACAGGAACGCCAGTTTCTGGCGGGCGTGGAAG
CCCAGTACGACTCCGAATCCGCCTACTCCAACATGAAGGAGGAACTCCGCAGCCAGGGCGTCATCTTCGTCAACTCCACG
GAAGGCCTGAAACACCATGAAGATGTCTTCCGCCCCTGGTTTGGAAAAGTCATTCCCACGGGAGACAACAAATTTTCCGC
TCTGAACAGCGCAGTATTTTCCGGAGGTTCCTTCATTTACGTACCCAAAGGGGTTAAACTCAAACATCCTCTCCAGGCGT
ATTTCCGAATCAACTCGGAAAATTTCGGGCAGTTCGAACGAACTCTCATCATTGCGGATGAAGGTGCGGAACTCATGTAC
ATGGAAGGATGCACGGCACCCCAGTTTGAAACTTCCACCCTCCACTCCGCCGTTGTGGAACTGGTCGCGCTCAAGGGCGC
GAAAATTCAGTACGTCACCGTGCAAAACTGGTCCTCCAATGTCTTCAACATGGTCACCAAGCGCGGTCTTGCCATGGAAG
ATGCGGAAATCCGCTGGATAGACTGCAACATTGGTTCCGGCCTCACCATGAAATACCCGGCTGTGGTGCTCAAAGGCAGG
CGCGCGCGGGGGGAAGTCATCTCCATCGCTCTGGCAAACACGGGCCAGCATCAAGATACGGGGGCCAAAATGATCCATGC
GGCGGACGACACTACGTCCAACATCGTTTCCAAATCCATCAGCATCGGCGAAGGGCGCGCCAGCTACCGGGGCCAGGTAA
TCATGGGCAAAGGGCTTAAGGGGTGCAGGAACAACACGGAATGCGACGCCCTACTTCTGGCAGCCAACAGCCGTACGGAC
ACCTACCCTGCCATCACGGTAAAAGGGGATGGAGGCACGGTGCAGCATGAGGCATCCGTCTCCCAGGTCTCTGAAGAAAT
GCTTTTTTACATGCAGCAGCGGGGCATCCCGAAAGCTGCGGCGATGTCTCTGGCCGTCAATGGATTCATTAACGACCTCG
TTCAGGAATTCCCCATGGAATACTCTGTGGAGCTGCGCAGGCTCATTGATCTGGAAATGGAAGACAGCATCGGATAA

Upstream 100 bases:

>100_bases
GCGGAGAACTGGTGGACGAACTGGAAAGCAGGGGATACGAGTTCCTGAAAGAAACGGAAACAGCGGAAAAGGCATAACGC
CGCCAATCCGGCAATCAATC

Downstream 100 bases:

>100_bases
GGAGGGAAATAATGAACCACTTGCTTAACGAAGAACAATTTTCCGCAGGCTTTCTTCCCGCATGGTTTGAAGCCCGGCGC
CGCCATGCCCTGGAACAGGC

Product: FeS assembly protein SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSDTPDMSENGNTQNLFDFDRSKGNFSFPERHKFDAGYGLTEATIDYICDVKDDPEWVRQFRKNALAVFESKPMPTHWAS
PDIKKIDFSQIRYYLSDGERPKRSWDDVPEDVKRTFERLGVPEQERQFLAGVEAQYDSESAYSNMKEELRSQGVIFVNST
EGLKHHEDVFRPWFGKVIPTGDNKFSALNSAVFSGGSFIYVPKGVKLKHPLQAYFRINSENFGQFERTLIIADEGAELMY
MEGCTAPQFETSTLHSAVVELVALKGAKIQYVTVQNWSSNVFNMVTKRGLAMEDAEIRWIDCNIGSGLTMKYPAVVLKGR
RARGEVISIALANTGQHQDTGAKMIHAADDTTSNIVSKSISIGEGRASYRGQVIMGKGLKGCRNNTECDALLLAANSRTD
TYPAITVKGDGGTVQHEASVSQVSEEMLFYMQQRGIPKAAAMSLAVNGFINDLVQEFPMEYSVELRRLIDLEMEDSIG

Sequences:

>Translated_478_residues
MSDTPDMSENGNTQNLFDFDRSKGNFSFPERHKFDAGYGLTEATIDYICDVKDDPEWVRQFRKNALAVFESKPMPTHWAS
PDIKKIDFSQIRYYLSDGERPKRSWDDVPEDVKRTFERLGVPEQERQFLAGVEAQYDSESAYSNMKEELRSQGVIFVNST
EGLKHHEDVFRPWFGKVIPTGDNKFSALNSAVFSGGSFIYVPKGVKLKHPLQAYFRINSENFGQFERTLIIADEGAELMY
MEGCTAPQFETSTLHSAVVELVALKGAKIQYVTVQNWSSNVFNMVTKRGLAMEDAEIRWIDCNIGSGLTMKYPAVVLKGR
RARGEVISIALANTGQHQDTGAKMIHAADDTTSNIVSKSISIGEGRASYRGQVIMGKGLKGCRNNTECDALLLAANSRTD
TYPAITVKGDGGTVQHEASVSQVSEEMLFYMQQRGIPKAAAMSLAVNGFINDLVQEFPMEYSVELRRLIDLEMEDSIG
>Mature_477_residues
SDTPDMSENGNTQNLFDFDRSKGNFSFPERHKFDAGYGLTEATIDYICDVKDDPEWVRQFRKNALAVFESKPMPTHWASP
DIKKIDFSQIRYYLSDGERPKRSWDDVPEDVKRTFERLGVPEQERQFLAGVEAQYDSESAYSNMKEELRSQGVIFVNSTE
GLKHHEDVFRPWFGKVIPTGDNKFSALNSAVFSGGSFIYVPKGVKLKHPLQAYFRINSENFGQFERTLIIADEGAELMYM
EGCTAPQFETSTLHSAVVELVALKGAKIQYVTVQNWSSNVFNMVTKRGLAMEDAEIRWIDCNIGSGLTMKYPAVVLKGRR
ARGEVISIALANTGQHQDTGAKMIHAADDTTSNIVSKSISIGEGRASYRGQVIMGKGLKGCRNNTECDALLLAANSRTDT
YPAITVKGDGGTVQHEASVSQVSEEMLFYMQQRGIPKAAAMSLAVNGFINDLVQEFPMEYSVELRRLIDLEMEDSIG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=464, Percent_Identity=38.3620689655172, Blast_Score=344, Evalue=6e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 53448; Mature: 53317

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTPDMSENGNTQNLFDFDRSKGNFSFPERHKFDAGYGLTEATIDYICDVKDDPEWVRQ
CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCHHHHHH
FRKNALAVFESKPMPTHWASPDIKKIDFSQIRYYLSDGERPKRSWDDVPEDVKRTFERLG
HHHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
VPEQERQFLAGVEAQYDSESAYSNMKEELRSQGVIFVNSTEGLKHHEDVFRPWFGKVIPT
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCEEEC
GDNKFSALNSAVFSGGSFIYVPKGVKLKHPLQAYFRINSENFGQFERTLIIADEGAELMY
CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEE
MEGCTAPQFETSTLHSAVVELVALKGAKIQYVTVQNWSSNVFNMVTKRGLAMEDAEIRWI
EECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCEECCCEEEEE
DCNIGSGLTMKYPAVVLKGRRARGEVISIALANTGQHQDTGAKMIHAADDTTSNIVSKSI
EECCCCCCEEECCCEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHCC
SIGEGRASYRGQVIMGKGLKGCRNNTECDALLLAANSRTDTYPAITVKGDGGTVQHEASV
CCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEECHHHH
SQVSEEMLFYMQQRGIPKAAAMSLAVNGFINDLVQEFPMEYSVELRRLIDLEMEDSIG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
SDTPDMSENGNTQNLFDFDRSKGNFSFPERHKFDAGYGLTEATIDYICDVKDDPEWVRQ
CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCHHHHHH
FRKNALAVFESKPMPTHWASPDIKKIDFSQIRYYLSDGERPKRSWDDVPEDVKRTFERLG
HHHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
VPEQERQFLAGVEAQYDSESAYSNMKEELRSQGVIFVNSTEGLKHHEDVFRPWFGKVIPT
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCEEEC
GDNKFSALNSAVFSGGSFIYVPKGVKLKHPLQAYFRINSENFGQFERTLIIADEGAELMY
CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEE
MEGCTAPQFETSTLHSAVVELVALKGAKIQYVTVQNWSSNVFNMVTKRGLAMEDAEIRWI
EECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCEECCCEEEEE
DCNIGSGLTMKYPAVVLKGRRARGEVISIALANTGQHQDTGAKMIHAADDTTSNIVSKSI
EECCCCCCEEECCCEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHCC
SIGEGRASYRGQVIMGKGLKGCRNNTECDALLLAANSRTDTYPAITVKGDGGTVQHEASV
CCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEECHHHH
SQVSEEMLFYMQQRGIPKAAAMSLAVNGFINDLVQEFPMEYSVELRRLIDLEMEDSIG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]