| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734986
Identifier: 187734986
GI number: 187734986
Start: 567156
End: 568616
Strand: Reverse
Name: 187734986
Synonym: Amuc_0479
Alternate gene names: NA
Gene position: 568616-567156 (Counterclockwise)
Preceding gene: 187734987
Following gene: 187734985
Centisome position: 21.34
GC content: 47.71
Gene sequence:
>1461_bases ATGCAATCCGCTATGTTGCCTTGCACTATGTGCAGGGGACAAAAGAGGGCGGCGGAAGGCAATGACGGGGGCATCAAATA TTGGTGGATTTTACCTTTTTTGTCTTTCTTTTTTTCCCTGAATAACCAAAGTTTTTGGATTGATGAATGTTGTACTGCAT TGTGCGCCATGCAGCAGGGAATGGAGGGATGTTGGAAGAAGATTTGTGAAATTGGCGGTAGCGATGCTCAAATGGCCTTT TATTACTACCTTTTATTTTTGTGGCATCATCTGACGGGTGCGGAGTCTGAATGGATGCTGAGGTTATTTAATATATTCTG GGTATTTTTATCATCCTGGTTTTTCAGAAAGGAACCAAAGGCGCTGGTGATTCTTTTGATTTCACCGTTTTTTGTTTATT ATTCTAACGAGTTGCGGCCCTATATGTTGCAGATAGCGGCCTCTTGCGCTGTCTCCATGTTGTTTTGGCAGGTTAGCCGG GGAGAACCGGTAAAATTCCATGTTTTTTTTGGTTCTCTGTTTTTTTTATGTCTTACAAGCCTGACAGGGGTTGTATGGGC GCTCGGTTTTGCCGCGGCATTCATGGTCATGGCATTCCGGCAGTTTGGAGGGCGGAGGTTTCGGCGAGCCCTGCTCTGGT GGATTTTTCCATTTTCCGGGTTGGGAGCATATTATCTTTACACTCTTTTCTTGGGCGCCCGTGCGGTTTCCATATCTTCC TCCTGGATAGTCAATGCATGCGCTTCCATGTACGAGTTATCGGGATTGGCCGGCATGGGGCCTTCCCGTCTAGAATTGAG GATGTGCATGACTCCTGATGCTTTATGGAATATGAACGGATTGGGGGCAGGGATGATCTCCGGCGCCATTCTTCTGGCCG GTTCTGCCTGCGGCATCATTTTGTGGAATAAGCGGGCTGAGAGGCCCTTGGTTCCTGCTTTGCTGGTGTTGATATTGCTT CCAGGGGCCGTATTCCTTTATGGAACGGAAATGATGGATTTCCGTTTTTCCGGACGGCATTGCGCGCCGTTATTGCCTGT ATTGTGTCTGGCCTGGTCCCTGGTGGCGTCATGGGATTGGTCGTTCCCCAGGATTGCCCAAACTATCCTGTTCCTATTAA TGATGATTGTTTGGGCGGTGAGCGATATTCGTATTCGTTGCAATGATTTGTATGGCCGTGAAGATTTCCGCTCTGCGGTA TCTTATTGCAAATTATTGCAGAGCAGTCATGTTGACATTTTACTTTTATGCAATGGGGCCGGAAAGGAGTTTTATGGATG GATTCCCGGCCCGTTAAAGGACAAATGGTCTGATTATAAGGTGATCGTAGTTTCCCGGCCATCCGATTATGCTGCTTTTC TCCAGCCCATAGAGTCTTCCGGCAAGTATGAACGTTCCGAATTATGCCGGGGGTTTGTCATCTATCGGCGGGGTGGAATC TCCCAACGAGAGGGGTATTGA
Upstream 100 bases:
>100_bases GTTGCAGAGATAAGAAGAAAAAACAAATCTATTTTCATATTTATCTATTGATATTCATATGGATATGTGATTTCTTCCTG TAAAAAAGCAGGCGGCGGAT
Downstream 100 bases:
>100_bases TGTTTTTGCTGTTGTTTCAACATTTTGAGAAGAGACAGTGTCATTATAGAAATGATGGATATTTCTTCCCGCCTGGTCAA AAGATGCAGGAAATTTATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MQSAMLPCTMCRGQKRAAEGNDGGIKYWWILPFLSFFFSLNNQSFWIDECCTALCAMQQGMEGCWKKICEIGGSDAQMAF YYYLLFLWHHLTGAESEWMLRLFNIFWVFLSSWFFRKEPKALVILLISPFFVYYSNELRPYMLQIAASCAVSMLFWQVSR GEPVKFHVFFGSLFFLCLTSLTGVVWALGFAAAFMVMAFRQFGGRRFRRALLWWIFPFSGLGAYYLYTLFLGARAVSISS SWIVNACASMYELSGLAGMGPSRLELRMCMTPDALWNMNGLGAGMISGAILLAGSACGIILWNKRAERPLVPALLVLILL PGAVFLYGTEMMDFRFSGRHCAPLLPVLCLAWSLVASWDWSFPRIAQTILFLLMMIVWAVSDIRIRCNDLYGREDFRSAV SYCKLLQSSHVDILLLCNGAGKEFYGWIPGPLKDKWSDYKVIVVSRPSDYAAFLQPIESSGKYERSELCRGFVIYRRGGI SQREGY
Sequences:
>Translated_486_residues MQSAMLPCTMCRGQKRAAEGNDGGIKYWWILPFLSFFFSLNNQSFWIDECCTALCAMQQGMEGCWKKICEIGGSDAQMAF YYYLLFLWHHLTGAESEWMLRLFNIFWVFLSSWFFRKEPKALVILLISPFFVYYSNELRPYMLQIAASCAVSMLFWQVSR GEPVKFHVFFGSLFFLCLTSLTGVVWALGFAAAFMVMAFRQFGGRRFRRALLWWIFPFSGLGAYYLYTLFLGARAVSISS SWIVNACASMYELSGLAGMGPSRLELRMCMTPDALWNMNGLGAGMISGAILLAGSACGIILWNKRAERPLVPALLVLILL PGAVFLYGTEMMDFRFSGRHCAPLLPVLCLAWSLVASWDWSFPRIAQTILFLLMMIVWAVSDIRIRCNDLYGREDFRSAV SYCKLLQSSHVDILLLCNGAGKEFYGWIPGPLKDKWSDYKVIVVSRPSDYAAFLQPIESSGKYERSELCRGFVIYRRGGI SQREGY >Mature_486_residues MQSAMLPCTMCRGQKRAAEGNDGGIKYWWILPFLSFFFSLNNQSFWIDECCTALCAMQQGMEGCWKKICEIGGSDAQMAF YYYLLFLWHHLTGAESEWMLRLFNIFWVFLSSWFFRKEPKALVILLISPFFVYYSNELRPYMLQIAASCAVSMLFWQVSR GEPVKFHVFFGSLFFLCLTSLTGVVWALGFAAAFMVMAFRQFGGRRFRRALLWWIFPFSGLGAYYLYTLFLGARAVSISS SWIVNACASMYELSGLAGMGPSRLELRMCMTPDALWNMNGLGAGMISGAILLAGSACGIILWNKRAERPLVPALLVLILL PGAVFLYGTEMMDFRFSGRHCAPLLPVLCLAWSLVASWDWSFPRIAQTILFLLMMIVWAVSDIRIRCNDLYGREDFRSAV SYCKLLQSSHVDILLLCNGAGKEFYGWIPGPLKDKWSDYKVIVVSRPSDYAAFLQPIESSGKYERSELCRGFVIYRRGGI SQREGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55314; Mature: 55314
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSAMLPCTMCRGQKRAAEGNDGGIKYWWILPFLSFFFSLNNQSFWIDECCTALCAMQQG CCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH MEGCWKKICEIGGSDAQMAFYYYLLFLWHHLTGAESEWMLRLFNIFWVFLSSWFFRKEPK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC ALVILLISPFFVYYSNELRPYMLQIAASCAVSMLFWQVSRGEPVKFHVFFGSLFFLCLTS EEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH LTGVVWALGFAAAFMVMAFRQFGGRRFRRALLWWIFPFSGLGAYYLYTLFLGARAVSISS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCH SWIVNACASMYELSGLAGMGPSRLELRMCMTPDALWNMNGLGAGMISGAILLAGSACGII HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHEECCCCEEE LWNKRAERPLVPALLVLILLPGAVFLYGTEMMDFRFSGRHCAPLLPVLCLAWSLVASWDW EECCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHHCCC SFPRIAQTILFLLMMIVWAVSDIRIRCNDLYGREDFRSAVSYCKLLQSSHVDILLLCNGA CCHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC GKEFYGWIPGPLKDKWSDYKVIVVSRPSDYAAFLQPIESSGKYERSELCRGFVIYRRGGI CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCC SQREGY CCCCCC >Mature Secondary Structure MQSAMLPCTMCRGQKRAAEGNDGGIKYWWILPFLSFFFSLNNQSFWIDECCTALCAMQQG CCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH MEGCWKKICEIGGSDAQMAFYYYLLFLWHHLTGAESEWMLRLFNIFWVFLSSWFFRKEPK HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC ALVILLISPFFVYYSNELRPYMLQIAASCAVSMLFWQVSRGEPVKFHVFFGSLFFLCLTS EEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH LTGVVWALGFAAAFMVMAFRQFGGRRFRRALLWWIFPFSGLGAYYLYTLFLGARAVSISS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCH SWIVNACASMYELSGLAGMGPSRLELRMCMTPDALWNMNGLGAGMISGAILLAGSACGII HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHEECCCCEEE LWNKRAERPLVPALLVLILLPGAVFLYGTEMMDFRFSGRHCAPLLPVLCLAWSLVASWDW EECCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHHCCC SFPRIAQTILFLLMMIVWAVSDIRIRCNDLYGREDFRSAVSYCKLLQSSHVDILLLCNGA CCHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC GKEFYGWIPGPLKDKWSDYKVIVVSRPSDYAAFLQPIESSGKYERSELCRGFVIYRRGGI CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCC SQREGY CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA