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The map label for this gene is glaB

Identifier: 187734987

GI number: 187734987

Start: 568821

End: 571205

Strand: Reverse

Name: glaB

Synonym: Amuc_0480

Alternate gene names: 187734987

Gene position: 571205-568821 (Counterclockwise)

Preceding gene: 187734990

Following gene: 187734986

Centisome position: 21.44

GC content: 53.79

Gene sequence:

>2385_bases
ATGGAAGGCAATCTCTCTTTTTCTCTGATGGAAGCTTCTGGACGATCCATATTTTTTCTGATAGAAGGAATACGGGAACA
GAGTATAAAAAATATGTTCAGCCGGATGTTTTCATGGAGTTTTGTAGTTGCAGCGTGTTTGGCGGGATTATTCCCGGCAC
AGTCCCAGGGCGAGGAAAAAGCTGCCCAATCCGGAACCATAGCCGTAAAAGTTCCTGCCTCCAGCCTGCTGATGACTCGC
CAGGAGACGGGGGAAACCCGGTTGGACCGGTCTTTCAGTAATGCGGGGTTGAGCATAGGCGGCAAAAAATATGCCACGGG
AATCGGTACGCACGCTACGTCCATGATTCCCCTGCCCGTTCCGGAAAACCCGAAAGTTTTGAGGCTGGAAGGTGCATGCG
GAATTGATGACGGTGCGGATGGAGACGGAAGCGTGGAATTCCGCGTGATGAGCGGGTCCGAGGTTTTATGGAGTTCCGGC
GTGATGAGGAGGGGGATGGCCGCGAAGAAGTTTTCCATTCCGGTGGCGGAAAACGGCATACGGCATCTTTACCTGATGGC
CGACCGGGTGGACAATAATTCTTACGACCATGCGGACTGGGTAGATCTGGCCTGGAAGACGACAGGAAGTGGGCAGGGGA
TGAAGGGAGCTGTGGTGAATGCCTCTGAATTCGGCATGGTTCCCGGCGTCAGAAAAGATCAGGGGCCGGCGCTGCGGGCT
GCCGTTTCCGCTCTCCGGAGGCAGGGCGGGGGCGTTTTGAACATCCCCAGAGGCATTTACCATTTTTATCCGGAGGGGGC
TTTGAACATGAGTTTCCATATTTCCAACCATGACCAGCCGCTGATTCATCCGGTGTGTGTGCCTCTGGCCGATTTGCGGA
ATGTCCGCGTGGAGGGCAATGGTTCCCTGTTTCTTTTTCACGGCAAGGTGGTTCCCCTCCTGGTGATGGACAGCGAAAAT
GTCAGCATCAACCGTTTATCCGTGGATTACGAACGGTCCTGGTGCACGGAGGCGCGCGTCGTGAAGACGGATGACCGGTT
CACGGAAGTGGAAATAGACAAAAAGGCCTACCCTTACGAAATCCGGAACAACAGGTTCGTTTTCCAGGGGAAAGGCTGGG
AAGAAGGAATGGGAAGCTGCATGGCCTTTGAGAAAGGGACGGGACATATTATCGCCAATACATCGGACATCGGCTGGAAC
GGGCATGTGGAGCCGCTGGGCGGGAGCCGTCTCCGTCTGTCCTGGAACCTCAGGCAGAAGGGAATCAAGCCGGGGGATAC
GCTGGTTCTTCGGAATTATAACCGCCCCCATCCGGGATGCGTGGTGTACCGGGCTCGGAAAACATCACTGAATGACGTAT
CTCTGCACCAGAGCTCAGGCATGGCCCTGCTGGTCCAGCGATCGGAGGACTTTCATATGAAAGGCGGCGGAGTCATGGTC
AGGAAAGGCACAGGGCGCGTACACACCGCCGGAGCGGACGCAACCCATTTTTCCAATACCCGGGGCGGAATCGTGGTGGA
GAAAGCCCTGTTCGAAGGGATGATGGATGATGCCATCAATGTTCATTCCACCTGCCTGGGCGTGATGGAAGTAGTGGACA
GCCATACCCTGAAGTGCAAATACATGCATCGGCAGGCGGTGGGGTTTGAGGTGTTTCTTCCCGGTGAAAAAATCCGTTTC
ATCAACGGTCCTACGCTGGAACCCGGCGGAACGGCCACTGTGAAGACGGCAGTGAAAAAGAATTCCGCGGAGATGGTGAT
TACGGTGGAAGAGCCGCTCCCCTCCTCCGTCAGGGCCGGGGATGCCGTGGAGAATGCGGATTTTTACCCTTCCGTGGTTT
TCCGCAACAATATCGTCCGCAACAACCGTGCCAGAGGATCTCTTTTTACAACGCCGGAGAGAGTGCTGGTGGAGGGCAAT
TTGTTTGACCATTCCTCCGGCTCCGCCATTCTATTGGCAGGGGATGCCCAGGGGTGGTATGAAAGCGGCGCCTGCCATGA
AGTGGTGATCCGCAAAAATACATTCATTAACAACCTGACCTCGCGTTACCAGTTTACGAATGCCATCATTTCCATTTACC
CGGAAGTCAAGCAGCTGGACAGGCAGAGGGATTACTATCATCGCAATGTGCTGATAGAAAATAATGTTTTCAAGACGTTC
GATGTGCCGCTGCTGTTCGCCATTTCCACGGACAACCTCAAGTTCATCAATAATAAGGTCATTTACAATGACGAGTTTAA
GGGATGGGGGCAGAAACCTTTCCAATTCAGAAGATGCGCCAATATTCTGATTAAAGATAACAAGGTGCTGCCTCCCCGCA
CATGGACCCTTGAGGACTGCAAGCTGGAAAATACCCCATCAGATCAGGTCCGCTTTGGTGGATAA

Upstream 100 bases:

>100_bases
CAAGCGTGGCGCCTCCGCGCCCGCAGGCGGAAAGAGCCGGCAGGATGCCGGGCAGTAGGAAGAATGCTGATCGCATGGAG
ACAGTGTCCCTGAATTCGGT

Downstream 100 bases:

>100_bases
GTTTTTTATTTTACGCAATATCCGTATAAACAACATTTTTTTGCGGATTGCATATCCGGTGGCAACATATTTTTCTAAGA
TAAAAACATCAATAACTTTT

Product: Glycosyl hydrolase family 98 carbohydrate binding module

Products: NA

Alternate protein names: Exo-alpha-galactosidase B

Number of amino acids: Translated: 794; Mature: 794

Protein sequence:

>794_residues
MEGNLSFSLMEASGRSIFFLIEGIREQSIKNMFSRMFSWSFVVAACLAGLFPAQSQGEEKAAQSGTIAVKVPASSLLMTR
QETGETRLDRSFSNAGLSIGGKKYATGIGTHATSMIPLPVPENPKVLRLEGACGIDDGADGDGSVEFRVMSGSEVLWSSG
VMRRGMAAKKFSIPVAENGIRHLYLMADRVDNNSYDHADWVDLAWKTTGSGQGMKGAVVNASEFGMVPGVRKDQGPALRA
AVSALRRQGGGVLNIPRGIYHFYPEGALNMSFHISNHDQPLIHPVCVPLADLRNVRVEGNGSLFLFHGKVVPLLVMDSEN
VSINRLSVDYERSWCTEARVVKTDDRFTEVEIDKKAYPYEIRNNRFVFQGKGWEEGMGSCMAFEKGTGHIIANTSDIGWN
GHVEPLGGSRLRLSWNLRQKGIKPGDTLVLRNYNRPHPGCVVYRARKTSLNDVSLHQSSGMALLVQRSEDFHMKGGGVMV
RKGTGRVHTAGADATHFSNTRGGIVVEKALFEGMMDDAINVHSTCLGVMEVVDSHTLKCKYMHRQAVGFEVFLPGEKIRF
INGPTLEPGGTATVKTAVKKNSAEMVITVEEPLPSSVRAGDAVENADFYPSVVFRNNIVRNNRARGSLFTTPERVLVEGN
LFDHSSGSAILLAGDAQGWYESGACHEVVIRKNTFINNLTSRYQFTNAIISIYPEVKQLDRQRDYYHRNVLIENNVFKTF
DVPLLFAISTDNLKFINNKVIYNDEFKGWGQKPFQFRRCANILIKDNKVLPPRTWTLEDCKLENTPSDQVRFGG

Sequences:

>Translated_794_residues
MEGNLSFSLMEASGRSIFFLIEGIREQSIKNMFSRMFSWSFVVAACLAGLFPAQSQGEEKAAQSGTIAVKVPASSLLMTR
QETGETRLDRSFSNAGLSIGGKKYATGIGTHATSMIPLPVPENPKVLRLEGACGIDDGADGDGSVEFRVMSGSEVLWSSG
VMRRGMAAKKFSIPVAENGIRHLYLMADRVDNNSYDHADWVDLAWKTTGSGQGMKGAVVNASEFGMVPGVRKDQGPALRA
AVSALRRQGGGVLNIPRGIYHFYPEGALNMSFHISNHDQPLIHPVCVPLADLRNVRVEGNGSLFLFHGKVVPLLVMDSEN
VSINRLSVDYERSWCTEARVVKTDDRFTEVEIDKKAYPYEIRNNRFVFQGKGWEEGMGSCMAFEKGTGHIIANTSDIGWN
GHVEPLGGSRLRLSWNLRQKGIKPGDTLVLRNYNRPHPGCVVYRARKTSLNDVSLHQSSGMALLVQRSEDFHMKGGGVMV
RKGTGRVHTAGADATHFSNTRGGIVVEKALFEGMMDDAINVHSTCLGVMEVVDSHTLKCKYMHRQAVGFEVFLPGEKIRF
INGPTLEPGGTATVKTAVKKNSAEMVITVEEPLPSSVRAGDAVENADFYPSVVFRNNIVRNNRARGSLFTTPERVLVEGN
LFDHSSGSAILLAGDAQGWYESGACHEVVIRKNTFINNLTSRYQFTNAIISIYPEVKQLDRQRDYYHRNVLIENNVFKTF
DVPLLFAISTDNLKFINNKVIYNDEFKGWGQKPFQFRRCANILIKDNKVLPPRTWTLEDCKLENTPSDQVRFGG
>Mature_794_residues
MEGNLSFSLMEASGRSIFFLIEGIREQSIKNMFSRMFSWSFVVAACLAGLFPAQSQGEEKAAQSGTIAVKVPASSLLMTR
QETGETRLDRSFSNAGLSIGGKKYATGIGTHATSMIPLPVPENPKVLRLEGACGIDDGADGDGSVEFRVMSGSEVLWSSG
VMRRGMAAKKFSIPVAENGIRHLYLMADRVDNNSYDHADWVDLAWKTTGSGQGMKGAVVNASEFGMVPGVRKDQGPALRA
AVSALRRQGGGVLNIPRGIYHFYPEGALNMSFHISNHDQPLIHPVCVPLADLRNVRVEGNGSLFLFHGKVVPLLVMDSEN
VSINRLSVDYERSWCTEARVVKTDDRFTEVEIDKKAYPYEIRNNRFVFQGKGWEEGMGSCMAFEKGTGHIIANTSDIGWN
GHVEPLGGSRLRLSWNLRQKGIKPGDTLVLRNYNRPHPGCVVYRARKTSLNDVSLHQSSGMALLVQRSEDFHMKGGGVMV
RKGTGRVHTAGADATHFSNTRGGIVVEKALFEGMMDDAINVHSTCLGVMEVVDSHTLKCKYMHRQAVGFEVFLPGEKIRF
INGPTLEPGGTATVKTAVKKNSAEMVITVEEPLPSSVRAGDAVENADFYPSVVFRNNIVRNNRARGSLFTTPERVLVEGN
LFDHSSGSAILLAGDAQGWYESGACHEVVIRKNTFINNLTSRYQFTNAIISIYPEVKQLDRQRDYYHRNVLIENNVFKTF
DVPLLFAISTDNLKFINNKVIYNDEFKGWGQKPFQFRRCANILIKDNKVLPPRTWTLEDCKLENTPSDQVRFGG

Specific function: Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLAB_AKKM8 (B2UNU8)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001877099.1
- GeneID:   6275422
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0480
- OMA:   LTWTPEV
- ProtClustDB:   CLSK823424
- InterPro:   IPR013222
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10
- SMART:   SM00710

Pfam domain/function: PF08305 NPCBM; SSF51126 Pectin_lyas_like

EC number: =3.2.1.22

Molecular weight: Translated: 87764; Mature: 87764

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGNLSFSLMEASGRSIFFLIEGIREQSIKNMFSRMFSWSFVVAACLAGLFPAQSQGEEK
CCCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AAQSGTIAVKVPASSLLMTRQETGETRLDRSFSNAGLSIGGKKYATGIGTHATSMIPLPV
HHCCCEEEEEECCHHEEEEHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEECCC
PENPKVLRLEGACGIDDGADGDGSVEFRVMSGSEVLWSSGVMRRGMAAKKFSIPVAENGI
CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEHHCCHHHCCCCCCEEECCHHCCCC
RHLYLMADRVDNNSYDHADWVDLAWKTTGSGQGMKGAVVNASEFGMVPGVRKDQGPALRA
EEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHH
AVSALRRQGGGVLNIPRGIYHFYPEGALNMSFHISNHDQPLIHPVCVPLADLRNVRVEGN
HHHHHHHCCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCCCHHHHCHHHHCEEEEECC
GSLFLFHGKVVPLLVMDSENVSINRLSVDYERSWCTEARVVKTDDRFTEVEIDKKAYPYE
CCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCEE
IRNNRFVFQGKGWEEGMGSCMAFEKGTGHIIANTSDIGWNGHVEPLGGSRLRLSWNLRQK
ECCCEEEEECCCHHHCCCCEEEEECCCCEEEECCCCCCCCCEECCCCCCEEEEEECHHHC
GIKPGDTLVLRNYNRPHPGCVVYRARKTSLNDVSLHQSSGMALLVQRSEDFHMKGGGVMV
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEECCCCEEE
RKGTGRVHTAGADATHFSNTRGGIVVEKALFEGMMDDAINVHSTCLGVMEVVDSHTLKCK
ECCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YMHRQAVGFEVFLPGEKIRFINGPTLEPGGTATVKTAVKKNSAEMVITVEEPLPSSVRAG
EEEHHCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCC
DAVENADFYPSVVFRNNIVRNNRARGSLFTTPERVLVEGNLFDHSSGSAILLAGDAQGWY
CCCCCCCCCCEEEEECCEECCCCCCCCEECCCCEEEEECCEEECCCCCEEEEEECCCCCC
ESGACHEVVIRKNTFINNLTSRYQFTNAIISIYPEVKQLDRQRDYYHRNVLIENNVFKTF
CCCCEEEEEEECCCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCEEEECCCEEEE
DVPLLFAISTDNLKFINNKVIYNDEFKGWGQKPFQFRRCANILIKDNKVLPPRTWTLEDC
CCEEEEEEECCCEEEECCEEEECCCCCCCCCCCHHHHHHCCEEEECCEECCCCCCCCCCC
KLENTPSDQVRFGG
CCCCCCCCCCEECC
>Mature Secondary Structure
MEGNLSFSLMEASGRSIFFLIEGIREQSIKNMFSRMFSWSFVVAACLAGLFPAQSQGEEK
CCCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AAQSGTIAVKVPASSLLMTRQETGETRLDRSFSNAGLSIGGKKYATGIGTHATSMIPLPV
HHCCCEEEEEECCHHEEEEHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEECCC
PENPKVLRLEGACGIDDGADGDGSVEFRVMSGSEVLWSSGVMRRGMAAKKFSIPVAENGI
CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEHHCCHHHCCCCCCEEECCHHCCCC
RHLYLMADRVDNNSYDHADWVDLAWKTTGSGQGMKGAVVNASEFGMVPGVRKDQGPALRA
EEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHH
AVSALRRQGGGVLNIPRGIYHFYPEGALNMSFHISNHDQPLIHPVCVPLADLRNVRVEGN
HHHHHHHCCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCCCHHHHCHHHHCEEEEECC
GSLFLFHGKVVPLLVMDSENVSINRLSVDYERSWCTEARVVKTDDRFTEVEIDKKAYPYE
CCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCEE
IRNNRFVFQGKGWEEGMGSCMAFEKGTGHIIANTSDIGWNGHVEPLGGSRLRLSWNLRQK
ECCCEEEEECCCHHHCCCCEEEEECCCCEEEECCCCCCCCCEECCCCCCEEEEEECHHHC
GIKPGDTLVLRNYNRPHPGCVVYRARKTSLNDVSLHQSSGMALLVQRSEDFHMKGGGVMV
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEECCCCEEE
RKGTGRVHTAGADATHFSNTRGGIVVEKALFEGMMDDAINVHSTCLGVMEVVDSHTLKCK
ECCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YMHRQAVGFEVFLPGEKIRFINGPTLEPGGTATVKTAVKKNSAEMVITVEEPLPSSVRAG
EEEHHCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCC
DAVENADFYPSVVFRNNIVRNNRARGSLFTTPERVLVEGNLFDHSSGSAILLAGDAQGWY
CCCCCCCCCCEEEEECCEECCCCCCCCEECCCCEEEEECCEEECCCCCEEEEEECCCCCC
ESGACHEVVIRKNTFINNLTSRYQFTNAIISIYPEVKQLDRQRDYYHRNVLIENNVFKTF
CCCCEEEEEEECCCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCCEEEECCCEEEE
DVPLLFAISTDNLKFINNKVIYNDEFKGWGQKPFQFRRCANILIKDNKVLPPRTWTLEDC
CCEEEEEEECCCEEEECCEEEECCCCCCCCCCCHHHHHHCCEEEECCEECCCCCCCCCCC
KLENTPSDQVRFGG
CCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA