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The map label for this gene is ygaD [C]

Identifier: 187734937

GI number: 187734937

Start: 513954

End: 515198

Strand: Reverse

Name: ygaD [C]

Synonym: Amuc_0430

Alternate gene names: 187734937

Gene position: 515198-513954 (Counterclockwise)

Preceding gene: 187734940

Following gene: 187734927

Centisome position: 19.34

GC content: 60.56

Gene sequence:

>1245_bases
ATGAAACAGATCAGGGTTGAATTGATCAACACCGGGACGGAAATTTTGCTGGGGAGTATTGTGAATACAAATGCCGCATG
GCTGGGCAACAGATTATTTGAGGCCGGGTTCCGTGTGGGGAGGGTAACCGTCGTGCCCGACGGTTACGCTATTAACGAGG
CCATGAGGGAGAGCGCCCGGCGCGCAGATATCGTGATTGTAAGCGGGGGACTGGGGCCGACGAGTGATGATGTGACCCGG
GAAGCCCTGTGCGACGTGTGCGGCGTGGACATGCACCGTGACGAGCATGTGGCTGAGTGGCTGAAGAGTTATTTTGAACG
GAGGGGGATTCCCATTGCGGAGTGTAATTTCAAGCAGGCCATGGTTCCGGATGGCGCCGCGGTGCTGGAGAATTCCAATG
GGACGGCGCCCGGACTGGTGATGCCTGCCAGCGGTTCCCTTCCCATGTTCATCCTGCTGCCGGGGCCGCCGGCGGAGTTG
AAGCCGATGGTGGAACATTCCGTGATGCCGCTTCTGGAAGATTTGGCGGATGAGGATATTCCTCATTTGCGCGTGTTCCG
CCTGGTAGGGATAGGGGAGAGCGATCTCCAGGAGCTGGTGGATGGTTCCCTGCACCAGGTGGAGGGGCTGGAGGTGGCGT
ATTGCGCGCGCGTCGGGGAAGTGGACGTGCGCCTGGTGGGCAGTGAGGTGGCCCTGAAACAGGGAGAAGCCCGTTTGCGC
ATTCTGGCCGGGGCGTATGTGCTCGCTCCTGCCGGGGCATCCCTGGAGAAAGCGGTTGTGTGCCATTTGGCGCAGCAGGA
TCTGAAGGCGGCGACGGCGGAGAGCTGCACCGGCGGCCTGATTGCCAAGAGGATTACGGATGTTCCGGGGGCCTCCGGGG
TTTTTGAATTCGGATGGGTTACTTATGCCGACCGGGCAAAGACGGAGATGCTGGGCGTTCCGGAGAATGTTCTGAAGCGT
TACGGAGCAGTCAGCGAACCCGTGGTTAAAGCGATGGCGGAAGGAGCTCTGGAACGCTCCGGAGCCGATGTTGCTGTTGC
CGTCAGCGGTATTGCGGGGCCCGGAGGCGGTACGCCGGAAAAGCCTGTGGGGACCGTATGGCTTGCCTGGGCTTTCCGGG
GGGGGGAGACGCGGACGGAGATGATGCTTTATCCGCGGGACCGCTCATCTTTCCGTAAGATGGTTTCCCAACGGGCGCTT
GCGGGGCTTCTGGATGCCAGGAGAAAAGAGCCTGTTACGGAATGA

Upstream 100 bases:

>100_bases
TGCCCCTAATGTATCTTACGGGGAGTTTAAATGAAGTTTTTTATGATACATGGCAGGATTGTTGCATGTCACGGGGTGCT
TGAGGGAGCATACTGGCTGC

Downstream 100 bases:

>100_bases
GGAACCATACGGGGAGCATTCCGGCTTCATGAAGTCCGCTGATGAATTCAAAGATGCCGATGAACCAGATGAACCACAGC
GCATCCACAATGTTGTGCGT

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKQIRVELINTGTEILLGSIVNTNAAWLGNRLFEAGFRVGRVTVVPDGYAINEAMRESARRADIVIVSGGLGPTSDDVTR
EALCDVCGVDMHRDEHVAEWLKSYFERRGIPIAECNFKQAMVPDGAAVLENSNGTAPGLVMPASGSLPMFILLPGPPAEL
KPMVEHSVMPLLEDLADEDIPHLRVFRLVGIGESDLQELVDGSLHQVEGLEVAYCARVGEVDVRLVGSEVALKQGEARLR
ILAGAYVLAPAGASLEKAVVCHLAQQDLKAATAESCTGGLIAKRITDVPGASGVFEFGWVTYADRAKTEMLGVPENVLKR
YGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPEKPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRKMVSQRAL
AGLLDARRKEPVTE

Sequences:

>Translated_414_residues
MKQIRVELINTGTEILLGSIVNTNAAWLGNRLFEAGFRVGRVTVVPDGYAINEAMRESARRADIVIVSGGLGPTSDDVTR
EALCDVCGVDMHRDEHVAEWLKSYFERRGIPIAECNFKQAMVPDGAAVLENSNGTAPGLVMPASGSLPMFILLPGPPAEL
KPMVEHSVMPLLEDLADEDIPHLRVFRLVGIGESDLQELVDGSLHQVEGLEVAYCARVGEVDVRLVGSEVALKQGEARLR
ILAGAYVLAPAGASLEKAVVCHLAQQDLKAATAESCTGGLIAKRITDVPGASGVFEFGWVTYADRAKTEMLGVPENVLKR
YGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPEKPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRKMVSQRAL
AGLLDARRKEPVTE
>Mature_414_residues
MKQIRVELINTGTEILLGSIVNTNAAWLGNRLFEAGFRVGRVTVVPDGYAINEAMRESARRADIVIVSGGLGPTSDDVTR
EALCDVCGVDMHRDEHVAEWLKSYFERRGIPIAECNFKQAMVPDGAAVLENSNGTAPGLVMPASGSLPMFILLPGPPAEL
KPMVEHSVMPLLEDLADEDIPHLRVFRLVGIGESDLQELVDGSLHQVEGLEVAYCARVGEVDVRLVGSEVALKQGEARLR
ILAGAYVLAPAGASLEKAVVCHLAQQDLKAATAESCTGGLIAKRITDVPGASGVFEFGWVTYADRAKTEMLGVPENVLKR
YGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPEKPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRKMVSQRAL
AGLLDARRKEPVTE

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Escherichia coli, GI1789052, Length=143, Percent_Identity=53.1468531468531, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1788583, Length=289, Percent_Identity=32.1799307958478, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787818, Length=134, Percent_Identity=41.044776119403, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_AKKM8 (B2UNF6)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001877049.1
- ProteinModelPortal:   B2UNF6
- SMR:   B2UNF6
- GeneID:   6275602
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0430
- HOGENOM:   HBG449871
- OMA:   NPTVAPY
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 44254; Mature: 44254

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIRVELINTGTEILLGSIVNTNAAWLGNRLFEAGFRVGRVTVVPDGYAINEAMRESAR
CCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHC
RADIVIVSGGLGPTSDDVTREALCDVCGVDMHRDEHVAEWLKSYFERRGIPIAECNFKQA
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHH
MVPDGAAVLENSNGTAPGLVMPASGSLPMFILLPGPPAELKPMVEHSVMPLLEDLADEDI
CCCCCCEEEECCCCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
PHLRVFRLVGIGESDLQELVDGSLHQVEGLEVAYCARVGEVDVRLVGSEVALKQGEARLR
CCEEEEEEECCCHHHHHHHHCCCHHHHCCCEEEEHHHCCCEEEEEECCHHHHHCCCCEEE
ILAGAYVLAPAGASLEKAVVCHLAQQDLKAATAESCTGGLIAKRITDVPGASGVFEFGWV
EEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCE
TYADRAKTEMLGVPENVLKRYGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPE
EECCHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
KPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRKMVSQRALAGLLDARRKEPVTE
CCCCEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQIRVELINTGTEILLGSIVNTNAAWLGNRLFEAGFRVGRVTVVPDGYAINEAMRESAR
CCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHC
RADIVIVSGGLGPTSDDVTREALCDVCGVDMHRDEHVAEWLKSYFERRGIPIAECNFKQA
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHH
MVPDGAAVLENSNGTAPGLVMPASGSLPMFILLPGPPAELKPMVEHSVMPLLEDLADEDI
CCCCCCEEEECCCCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
PHLRVFRLVGIGESDLQELVDGSLHQVEGLEVAYCARVGEVDVRLVGSEVALKQGEARLR
CCEEEEEEECCCHHHHHHHHCCCHHHHCCCEEEEHHHCCCEEEEEECCHHHHHCCCCEEE
ILAGAYVLAPAGASLEKAVVCHLAQQDLKAATAESCTGGLIAKRITDVPGASGVFEFGWV
EEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCE
TYADRAKTEMLGVPENVLKRYGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPE
EECCHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
KPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRKMVSQRALAGLLDARRKEPVTE
CCCCEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA