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The map label for this gene is xerC [H]

Identifier: 187734784

GI number: 187734784

Start: 334425

End: 335327

Strand: Reverse

Name: xerC [H]

Synonym: Amuc_0273

Alternate gene names: 187734784

Gene position: 335327-334425 (Counterclockwise)

Preceding gene: 187734785

Following gene: 187734783

Centisome position: 12.59

GC content: 55.15

Gene sequence:

>903_bases
ATGATGAGGATTCCTCTGGAACCGGAACAGGACTTTCTTCAATATCTGGAGGTGGAAAAGCAGGCTTCTCCTCATACGGT
GGAGGTGTACGCCCGCGCCTTGCGCCAGTTCAGGGCCTGGGCGGCTGATTCATTCCCAGGGTGGGAGAATTGTACGCCGG
ACCAGATGAGGGACTGGCTTTTCCAGGAGCTGAAGGATGAAGCCGCCACGTCTTCCATCCGGCTGAGGTTTGCCGCCTTG
CGCAGTTTTTACCGTTTCATGATGCGGAGGCACGGGCTGGAGACGAATCCGATGACGGGCGTTTCCCTTCCCAGAAGGAA
AAAAACGCTTCCCGTTTTCCTGACACTCAACCAGATGTTGGAATTGTTGGAGCTTCCCTACAAGACGGCCGTTCCCGCCA
ATGCTCCCGCATGGCTTCCCTACCGTGATGCCGCCATATTGGAACTTTTTTATTCCTGCGGGATGCGCCTGAGTGAATTA
GTAGGGCTGGATGTCGGCAGTGTGGACCACCGTTTCCGGGGCGTGAAGGTAATGGGGAAGGGGCGCAAGGAGCGCATCCT
GCCTGTGGGAACTCCTGCTCTGGCTGCTCTGGAAACTTATGTTTCCATGGCCTGTCTGCCGAAGAATTCCCCCTTGTTTG
TCTCCCGTATAGGAACCCGGTTAAGCGCTCGCTCCGTGCAGATGATGCTGAACAAATATGTGAAGCTGTCTTCCATTCCT
TTTACCATTTCTCCCCATAAGATCAGGCATACATTCGCCACGCACATTCTGGAGGCAGGGGCGGATCTCCGTTCCGTCCA
GGAACTGCTGGGCCATGCTTCCTTATCCACTACCCAGATTTACACGCATGTGACGCGTGCCAGAATGGCGGAAGTTTACA
GACAGGCGCATCCCAGGGCATAA

Upstream 100 bases:

>100_bases
GATTTGTTCATCCGGGCCAATATTAGTGAAGTGCTGCTGAAGGAGTCGCCGGTGGATGCCGGGGATGACAAGGATAAAGG
TACGGAGTAATTTATTCTTC

Downstream 100 bases:

>100_bases
GGGTTTTTTTGTTTCATGAAGGAAGAACTTATGTTCGCAGGTATTCTGCTTCTTTCCCAGGCATCTCCGGGGCCCGACCA
GGCTTTTGTTACCCGGAGCA

Product: tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MMRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAATSSIRLRFAAL
RSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSEL
VGLDVGSVDHRFRGVKVMGKGRKERILPVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIP
FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA

Sequences:

>Translated_300_residues
MMRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAATSSIRLRFAAL
RSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSEL
VGLDVGSVDHRFRGVKVMGKGRKERILPVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIP
FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA
>Mature_300_residues
MMRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAATSSIRLRFAAL
RSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSEL
VGLDVGSVDHRFRGVKVMGKGRKERILPVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIP
FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=41.4383561643836, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789261, Length=306, Percent_Identity=36.2745098039216, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34221; Mature: 34221

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWL
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FQELKDEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEHHHHH
ELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGK
HHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHCCEEEECC
GRKERILPVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA
EEECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWL
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FQELKDEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEHHHHH
ELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGK
HHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHCCEEEECC
GRKERILPVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA
EEECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]