| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734785
Identifier: 187734785
GI number: 187734785
Start: 335338
End: 336189
Strand: Reverse
Name: 187734785
Synonym: Amuc_0274
Alternate gene names: NA
Gene position: 336189-335338 (Counterclockwise)
Preceding gene: 187734786
Following gene: 187734784
Centisome position: 12.62
GC content: 56.81
Gene sequence:
>852_bases ATGTTTATCTTGTCATGTTCCGCAGCGCTGGCGTTCGGTCTGTTCCCGTTTGCGGCAGGGCAATCCGTGGCTTCCGGTGA CCGCGGGAAAATGGAAACTGTCCCCAGGCCCGGACTGGAATGCCTTCAGGTGACTTTGCTCATCCGCCAAATGGTTTTGG ACCGCTATGACAGCACGAGTACGGGAATTTTGTCCGAACAGGACAAGGCCCGGTTGGTGGAGGATGCCCGCTCTGCGCGG AGGGAGGCCAGAAAAGCCTTCCTGAGGAAGTTTGATAAGGATGGGGACGGAAGGCTTTCCCCGGAAGAGTGCAGGGCTTT CCGGGAACATGTAGAGAAGCGGCGCGGGGTGCGCAGGCCGGATGCCGGGCCGGACAAGAGAGACGGAATTCCGTTTTACC CTCCCGCCGAGAGGAAGGAAATTCCTCCGCTCCCCCCTCCGGCAGAGGGGGTGGAAATGCCCATGGTGGAAATTCGCACG GTGGGACGGAAGCGCTTCATGGTTGCTCCCGGATTGTTTCTGCTGACTCGTAACATGTTGCTGCAGAATTATGATGCCAA CGGGAACGGCCGCATTGATCCGGAGGAACATGCCGTTGTCATGAAAGATGCCGCGGCTCTGTACCAGGCCAAAATGAAGG AAATGATGGAGCTTTACGATTTGGACCAGGACGGTGTGCTCAGCCCGGTGGAGAGAGAGCAGGCTCTGGCGGACAGCCAT AAAGACAGCCCTTTGTATGCCATGGAAGAACCGGACGATATTGATTTGTTCATCCGGGCCAATATTAGTGAAGTGCTGCT GAAGGAGTCGCCGGTGGATGCCGGGGATGACAAGGATAAAGGTACGGAGTAA
Upstream 100 bases:
>100_bases CTGCATCCGCCCGTGTCGCCCGCCGGCAGGGGCGGATGTTTATTTTTGAAACCGTCTTTTTCCGGCGGGGTTAGTAAAAG TGGTTATGAGATTGCTCCAC
Downstream 100 bases:
>100_bases TTTATTCTTCATGATGAGGATTCCTCTGGAACCGGAACAGGACTTTCTTCAATATCTGGAGGTGGAAAAGCAGGCTTCTC CTCATACGGTGGAGGTGTAC
Product: signal transduction protein with EFhand domain
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MFILSCSAALAFGLFPFAAGQSVASGDRGKMETVPRPGLECLQVTLLIRQMVLDRYDSTSTGILSEQDKARLVEDARSAR REARKAFLRKFDKDGDGRLSPEECRAFREHVEKRRGVRRPDAGPDKRDGIPFYPPAERKEIPPLPPPAEGVEMPMVEIRT VGRKRFMVAPGLFLLTRNMLLQNYDANGNGRIDPEEHAVVMKDAAALYQAKMKEMMELYDLDQDGVLSPVEREQALADSH KDSPLYAMEEPDDIDLFIRANISEVLLKESPVDAGDDKDKGTE
Sequences:
>Translated_283_residues MFILSCSAALAFGLFPFAAGQSVASGDRGKMETVPRPGLECLQVTLLIRQMVLDRYDSTSTGILSEQDKARLVEDARSAR REARKAFLRKFDKDGDGRLSPEECRAFREHVEKRRGVRRPDAGPDKRDGIPFYPPAERKEIPPLPPPAEGVEMPMVEIRT VGRKRFMVAPGLFLLTRNMLLQNYDANGNGRIDPEEHAVVMKDAAALYQAKMKEMMELYDLDQDGVLSPVEREQALADSH KDSPLYAMEEPDDIDLFIRANISEVLLKESPVDAGDDKDKGTE >Mature_283_residues MFILSCSAALAFGLFPFAAGQSVASGDRGKMETVPRPGLECLQVTLLIRQMVLDRYDSTSTGILSEQDKARLVEDARSAR REARKAFLRKFDKDGDGRLSPEECRAFREHVEKRRGVRRPDAGPDKRDGIPFYPPAERKEIPPLPPPAEGVEMPMVEIRT VGRKRFMVAPGLFLLTRNMLLQNYDANGNGRIDPEEHAVVMKDAAALYQAKMKEMMELYDLDQDGVLSPVEREQALADSH KDSPLYAMEEPDDIDLFIRANISEVLLKESPVDAGDDKDKGTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31681; Mature: 31681
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS50222 EF_HAND_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFILSCSAALAFGLFPFAAGQSVASGDRGKMETVPRPGLECLQVTLLIRQMVLDRYDSTS CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC TGILSEQDKARLVEDARSARREARKAFLRKFDKDGDGRLSPEECRAFREHVEKRRGVRRP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC DAGPDKRDGIPFYPPAERKEIPPLPPPAEGVEMPMVEIRTVGRKRFMVAPGLFLLTRNML CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHEECCCHHHHHHHHHH LQNYDANGNGRIDPEEHAVVMKDAAALYQAKMKEMMELYDLDQDGVLSPVEREQALADSH HHCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC KDSPLYAMEEPDDIDLFIRANISEVLLKESPVDAGDDKDKGTE CCCCEEECCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MFILSCSAALAFGLFPFAAGQSVASGDRGKMETVPRPGLECLQVTLLIRQMVLDRYDSTS CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC TGILSEQDKARLVEDARSARREARKAFLRKFDKDGDGRLSPEECRAFREHVEKRRGVRRP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC DAGPDKRDGIPFYPPAERKEIPPLPPPAEGVEMPMVEIRTVGRKRFMVAPGLFLLTRNML CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHEECCCHHHHHHHHHH LQNYDANGNGRIDPEEHAVVMKDAAALYQAKMKEMMELYDLDQDGVLSPVEREQALADSH HHCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC KDSPLYAMEEPDDIDLFIRANISEVLLKESPVDAGDDKDKGTE CCCCEEECCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA