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The map label for this gene is gcdB [H]

Identifier: 187734717

GI number: 187734717

Start: 253107

End: 254771

Strand: Direct

Name: gcdB [H]

Synonym: Amuc_0204

Alternate gene names: 187734717

Gene position: 253107-254771 (Clockwise)

Preceding gene: 187734716

Following gene: 187734718

Centisome position: 9.5

GC content: 59.1

Gene sequence:

>1665_bases
ATGAGTCTTTTTGATTCATTAATCACCTTTTTACAGGGGATGGGCGTCTTCTCCCTATCATGGCAGATGGTAGGGATGTG
GGGCATTGCCATTCTCCTCCTGTATCTGGGTGTAGCCAAGCAATACGAACCGCTCCTGATGGTTCCCATTGCTTTCGGCG
CCCTCATTGCCAACATTCCGGATAACGGAATGCTCATCACCCAGCTGAACCAGCAGGTCATCTCCTCCAATGAACAGGGG
GAAGTAACCGCCACGTCTCTGAACAACGTGGGGTACCTGCGCGTTCACGTGGCTCCGCTTCAGCAGGCTCCCTCCAAGGT
GCCGGCCAATCTGACCACGCCTGAATCCCGTGCCCAGTATCAGGAAATCATGCAGCAGCCCATGCAGGTTTACCCCGGCA
GCCAGCTGACCGTTTCCAAGATCAAGTCCGTGCGGGAATCCCAGGAAAAAGCAAAAGCTGACGCGGCCCGCCTGGGCGAC
GACAGCCTGACGGTGGACCCCAACCTGAAGGATTTCCAGAACGTGACGGAAGACAACGGCAATGAACCGGTCTTCCTGCT
CACGAACGGAGAAGGGACCACCGTCGTCCGCCAGCAGGGCGTCAATTACTTTGACACCAGCGGCAACCGGATTCCGGTGG
ATCTGAAAACCCAGAAGCTGGAGCCCCTGGTGGTTTCAGCCGCAGGCAAATACGTGGCCGTAGGCCAGCATACCCAGGAA
CTGCTGGTCACCTCCATCCACGGGGGCCTGTATGACTGGATCGGGCTGGGCATCAAGGCTGAAATTTTCCCGCCCATCAT
CTTTCTGGGCGTAGGAGCCCTGACGGACTTCGGCCCGCTGCTTGCCGCTCCGCGCACCCTGCTTCTGGGCGCAGCGGCCC
AGGTGGGCGTAGCCGCCACGTTCTTCATGGCCCTGTTCATGGGGTTCACCCCGAATGAATCCGCGTCCATCGGCATCATT
GGCGGCGCTGACGGCCCTACCTCCATCTTCCTGACGATGAAGCTGGCCCCGCACCTGCTGGGCGCCGTGGCCGTGGCCGC
ATACACGTACATGTCCCTGGTTCCGCTGATACAGCCGCCCATCATGGCGTTGCTGACGACCAAGAAGGAACGCCTCATCC
GCATGAAATCCCTGCGAACGGTCAGCAAGAGCGAAAAACTGTTTTTCGCCGTGCTGGTAACCATTGTCACCATTTTGCTG
ATTCCGGACGCATCCCCGCTGATCGGCATGCTGATGCTTGGCAACTTCCTGCGCGAATGCAAGGTGACGGAACGCTTGGT
TCAGGCCTCCCAGAATGAAATCATCAACATCGTCACCATCTTCCTGGGAACCTCCGTGGGGCTCACGATGCAGGGCGACC
GCTTCCTGCAGTCGGAAACGCTGCTGATCATCCTTCTGGGTATCGTCGCCTTCGGCGTGGCAACAGCGGGCGGAGTGATT
GCCGCCAAGATTATGAACCTCATCTGGCGCAAGAATCCGGTCAACCCCCTGATCGGGTCCGCAGGCGTCTCCGCCGTCCC
GATGGCAGCCCGCGTCTCCCACAATGTGGGCCAGAAGTACGACCCCTCCAACTACCTGCTCATGCACGCCATGGGTCCGA
ACGTTGCAGGCGTGATCGGCACCGCAGTCATCGCGGGCTACTACATCGCCACTCTGGCGAAATAA

Upstream 100 bases:

>100_bases
GGCACTGGCCAAAATTGGTTAATCCCGGCGGCGGCAGCCCGGAAACGCCAACAGTACCGGGCTCCGACTCAAATAATAAA
CCGCTACAAAAATATTCCCT

Downstream 100 bases:

>100_bases
CCAGAATTGAAAATTACTCCCGGCCTCGGCCCGTCCCATGAATTCCGCAGCCTCATTTTCCACCCCTCCGGAGGAGGAAG
GACCATGCGGCGACTGGACT

Product: sodium ion-translocating decarboxylase, beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MSLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIPDNGMLITQLNQQVISSNEQG
EVTATSLNNVGYLRVHVAPLQQAPSKVPANLTTPESRAQYQEIMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGD
DSLTVDPNLKDFQNVTEDNGNEPVFLLTNGEGTTVVRQQGVNYFDTSGNRIPVDLKTQKLEPLVVSAAGKYVAVGQHTQE
LLVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAATFFMALFMGFTPNESASIGII
GGADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPPIMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILL
IPDASPLIGMLMLGNFLRECKVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQSETLLIILLGIVAFGVATAGGVI
AAKIMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIGTAVIAGYYIATLAK

Sequences:

>Translated_554_residues
MSLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIPDNGMLITQLNQQVISSNEQG
EVTATSLNNVGYLRVHVAPLQQAPSKVPANLTTPESRAQYQEIMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGD
DSLTVDPNLKDFQNVTEDNGNEPVFLLTNGEGTTVVRQQGVNYFDTSGNRIPVDLKTQKLEPLVVSAAGKYVAVGQHTQE
LLVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAATFFMALFMGFTPNESASIGII
GGADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPPIMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILL
IPDASPLIGMLMLGNFLRECKVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQSETLLIILLGIVAFGVATAGGVI
AAKIMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIGTAVIAGYYIATLAK
>Mature_553_residues
SLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIPDNGMLITQLNQQVISSNEQGE
VTATSLNNVGYLRVHVAPLQQAPSKVPANLTTPESRAQYQEIMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGDD
SLTVDPNLKDFQNVTEDNGNEPVFLLTNGEGTTVVRQQGVNYFDTSGNRIPVDLKTQKLEPLVVSAAGKYVAVGQHTQEL
LVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAATFFMALFMGFTPNESASIGIIG
GADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPPIMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILLI
PDASPLIGMLMLGNFLRECKVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQSETLLIILLGIVAFGVATAGGVIA
AKIMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIGTAVIAGYYIATLAK

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 59281; Mature: 59149

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIP
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCC
DNGMLITQLNQQVISSNEQGEVTATSLNNVGYLRVHVAPLQQAPSKVPANLTTPESRAQY
CCCEEEEEHHHHHHCCCCCCCEEEEECCCCEEEEEEEECHHCCCCCCCCCCCCCHHHHHH
QEIMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGDDSLTVDPNLKDFQNVTEDNG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCC
NEPVFLLTNGEGTTVVRQQGVNYFDTSGNRIPVDLKTQKLEPLVVSAAGKYVAVGQHTQE
CCCEEEEECCCCCEEEHHCCCCEEECCCCEEEEEEECCCCCCEEEECCCCEEEECCCHHH
LLVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAAT
HHHHHHCCCHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FFMALFMGFTPNESASIGIIGGADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPP
HHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
IMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILLIPDASPLIGMLMLGNFLREC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
KVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQSETLLIILLGIVAFGVATAGGVI
HHHHHHHHHCCCCHHHHHHEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
AAKIMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIG
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
TAVIAGYYIATLAK
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIP
CHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCC
DNGMLITQLNQQVISSNEQGEVTATSLNNVGYLRVHVAPLQQAPSKVPANLTTPESRAQY
CCCEEEEEHHHHHHCCCCCCCEEEEECCCCEEEEEEEECHHCCCCCCCCCCCCCHHHHHH
QEIMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGDDSLTVDPNLKDFQNVTEDNG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCC
NEPVFLLTNGEGTTVVRQQGVNYFDTSGNRIPVDLKTQKLEPLVVSAAGKYVAVGQHTQE
CCCEEEEECCCCCEEEHHCCCCEEECCCCEEEEEEECCCCCCEEEECCCCEEEECCCHHH
LLVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAAT
HHHHHHCCCHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FFMALFMGFTPNESASIGIIGGADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPP
HHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
IMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILLIPDASPLIGMLMLGNFLREC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
KVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQSETLLIILLGIVAFGVATAGGVI
HHHHHHHHHCCCCHHHHHHEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
AAKIMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIG
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHH
TAVIAGYYIATLAK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]