| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734661
Identifier: 187734661
GI number: 187734661
Start: 182059
End: 183288
Strand: Direct
Name: 187734661
Synonym: Amuc_0148
Alternate gene names: NA
Gene position: 182059-183288 (Clockwise)
Preceding gene: 187734659
Following gene: 187734662
Centisome position: 6.83
GC content: 54.96
Gene sequence:
>1230_bases ATGAACACGGTTTTAATCATTGGAGCAGGCGGCGTTGGGCATGTGGTAGCCAACAAATGCGCCCAGCTGCCGGATATTTT TCAAAACATTCATCTGGCCTCCCGCACGAAGAGCAAATGCGATGCCGTTGCGGAGGACGTACGCTCCAGAACGGGCGTCA GCATCACTACCCATTCCGTAGATGCGGACGACGTGCCCGCCACCGTAGCCCTCATCCGGGAAATCAAGCCGCAGCTGCTG ATCAACGTAGCCCTGCCCTACCAGGATCTCACCCTGATGGAAGCCTGCCTGGAAACCGGAGTCAACTACCTGGATACCGC CAACTATGAACCCCGTGACGTAGCCAAATTCGAATACTCCTGGCAATGGGCGTACCAGGAGCAATTCCGCAAAGCCGGGC TTTTTGCCCTGCTGGGTTCCGGCTTTGACCCAGGCGTCACCAATGTATTCACGGCATGGGCTCTCAAGCATCACTTTGAC GAAATCCATACGCTGGACATCATTGACGTCAATGGCGGCAATCATGGCAAGGCCTTCGCCACCAACTTCAACCCGGAAAT CAACATCCGGGAAGTAACGGCGCCCTGCCGCCACTGGGAAGACGGAGCCTTCCGGGAAACCGCTCCCATGAGCATGCACC AAAGTTTCACCTGCCCGCAGGAAGTGGGCACCTATGAAATCTACCGCATGTACCATGAAGAAATGGAAAGCCTGGTCAAG CACATCCCCACCATCCGCCAGGCTCAATTCTGGATGTCCTTCTCACCGAACTACCTCAAGCACCTGGAAGTGCTTCAGAA CGTGGGTATGACCCGCATTGACCCGGTCATGTACAACGGAGTTGAAATCATCCCGCTGCAATTCCTCAAGGCCGTTCTGC CGGACCCCGGGGACCTGGGCAAGACGACCAGGGGAAAAACCTGCATCGGCAACGTCATCACCGGAATCAAGGACGGCCAA TTCAAGGCTGTGTACATTTACAACATTTGCGACCATGAACAATGCTTTAAAGAAGTAGGTTCCCAGGCCATTTCCTATAC CACAGGGGTTCCGGCCATGATCGGCGCGGAAATGATCCTTACGGGCAAATGGACTGGCGCAGGAGTCTTCAATATGGAAC AAAATGATCCGGATCCCTTCATGGACGAGCTCAACAGGCGCGGCCTACCCTGGCACTGCGTGGAACTCACGGAAGAACAG GCCAAAACCCTGAAGGTCAACCAGCAATAA
Upstream 100 bases:
>100_bases GATGCCGGAAAAACTGATGCCCCATGGGAAGACGGTGTCATTATTGAAGCAAATCGGGAGTTGCCTTTCAGCCTGTTTTC ACTTATGTACAGAACCTATC
Downstream 100 bases:
>100_bases ATTTCAGCAAGCGCTGTCGGCATCATCAAAGCCGGACATTGGAAATTCAATGTCCGGCTTTTCCGTTTCCAGCGGGGAAC AGAATTCCCCAGGACAGCAC
Product: Saccharopine dehydrogenase
Products: L-lysine; 2-oxoglutarate; NADH; H+
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MNTVLIIGAGGVGHVVANKCAQLPDIFQNIHLASRTKSKCDAVAEDVRSRTGVSITTHSVDADDVPATVALIREIKPQLL INVALPYQDLTLMEACLETGVNYLDTANYEPRDVAKFEYSWQWAYQEQFRKAGLFALLGSGFDPGVTNVFTAWALKHHFD EIHTLDIIDVNGGNHGKAFATNFNPEINIREVTAPCRHWEDGAFRETAPMSMHQSFTCPQEVGTYEIYRMYHEEMESLVK HIPTIRQAQFWMSFSPNYLKHLEVLQNVGMTRIDPVMYNGVEIIPLQFLKAVLPDPGDLGKTTRGKTCIGNVITGIKDGQ FKAVYIYNICDHEQCFKEVGSQAISYTTGVPAMIGAEMILTGKWTGAGVFNMEQNDPDPFMDELNRRGLPWHCVELTEEQ AKTLKVNQQ
Sequences:
>Translated_409_residues MNTVLIIGAGGVGHVVANKCAQLPDIFQNIHLASRTKSKCDAVAEDVRSRTGVSITTHSVDADDVPATVALIREIKPQLL INVALPYQDLTLMEACLETGVNYLDTANYEPRDVAKFEYSWQWAYQEQFRKAGLFALLGSGFDPGVTNVFTAWALKHHFD EIHTLDIIDVNGGNHGKAFATNFNPEINIREVTAPCRHWEDGAFRETAPMSMHQSFTCPQEVGTYEIYRMYHEEMESLVK HIPTIRQAQFWMSFSPNYLKHLEVLQNVGMTRIDPVMYNGVEIIPLQFLKAVLPDPGDLGKTTRGKTCIGNVITGIKDGQ FKAVYIYNICDHEQCFKEVGSQAISYTTGVPAMIGAEMILTGKWTGAGVFNMEQNDPDPFMDELNRRGLPWHCVELTEEQ AKTLKVNQQ >Mature_409_residues MNTVLIIGAGGVGHVVANKCAQLPDIFQNIHLASRTKSKCDAVAEDVRSRTGVSITTHSVDADDVPATVALIREIKPQLL INVALPYQDLTLMEACLETGVNYLDTANYEPRDVAKFEYSWQWAYQEQFRKAGLFALLGSGFDPGVTNVFTAWALKHHFD EIHTLDIIDVNGGNHGKAFATNFNPEINIREVTAPCRHWEDGAFRETAPMSMHQSFTCPQEVGTYEIYRMYHEEMESLVK HIPTIRQAQFWMSFSPNYLKHLEVLQNVGMTRIDPVMYNGVEIIPLQFLKAVLPDPGDLGKTTRGKTCIGNVITGIKDGQ FKAVYIYNICDHEQCFKEVGSQAISYTTGVPAMIGAEMILTGKWTGAGVFNMEQNDPDPFMDELNRRGLPWHCVELTEEQ AKTLKVNQQ
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.5.1.7
Molecular weight: Translated: 45820; Mature: 45820
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTVLIIGAGGVGHVVANKCAQLPDIFQNIHLASRTKSKCDAVAEDVRSRTGVSITTHSV CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECC DADDVPATVALIREIKPQLLINVALPYQDLTLMEACLETGVNYLDTANYEPRDVAKFEYS CCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEE WQWAYQEQFRKAGLFALLGSGFDPGVTNVFTAWALKHHFDEIHTLDIIDVNGGNHGKAFA EEHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEE TNFNPEINIREVTAPCRHWEDGAFRETAPMSMHQSFTCPQEVGTYEIYRMYHEEMESLVK ECCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHCCCCCHHHHCHHHHHHHHHHHHHHHHH HIPTIRQAQFWMSFSPNYLKHLEVLQNVGMTRIDPVMYNGVEIIPLQFLKAVLPDPGDLG HCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEECHHHHCCEEEEHHHHHHHHCCCCCCCC KTTRGKTCIGNVITGIKDGQFKAVYIYNICDHEQCFKEVGSQAISYTTGVPAMIGAEMIL CCCCCCHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHEECCCCCCHHHCCEEEE TGKWTGAGVFNMEQNDPDPFMDELNRRGLPWHCVELTEEQAKTLKVNQQ EECCCCCEEEECCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHEECCCC >Mature Secondary Structure MNTVLIIGAGGVGHVVANKCAQLPDIFQNIHLASRTKSKCDAVAEDVRSRTGVSITTHSV CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECC DADDVPATVALIREIKPQLLINVALPYQDLTLMEACLETGVNYLDTANYEPRDVAKFEYS CCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEE WQWAYQEQFRKAGLFALLGSGFDPGVTNVFTAWALKHHFDEIHTLDIIDVNGGNHGKAFA EEHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEE TNFNPEINIREVTAPCRHWEDGAFRETAPMSMHQSFTCPQEVGTYEIYRMYHEEMESLVK ECCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHCCCCCHHHHCHHHHHHHHHHHHHHHHH HIPTIRQAQFWMSFSPNYLKHLEVLQNVGMTRIDPVMYNGVEIIPLQFLKAVLPDPGDLG HCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEECHHHHCCEEEEHHHHHHHHCCCCCCCC KTTRGKTCIGNVITGIKDGQFKAVYIYNICDHEQCFKEVGSQAISYTTGVPAMIGAEMIL CCCCCCHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHEECCCCCCHHHCCEEEE TGKWTGAGVFNMEQNDPDPFMDELNRRGLPWHCVELTEEQAKTLKVNQQ EECCCCCEEEECCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N6-(L-1,3-dicarboxypropyl)-L-lysine; NAD+; H2O
Specific reaction: N6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-lysine + 2-oxoglutarate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA