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The map label for this gene is srpC [H]

Identifier: 187734619

GI number: 187734619

Start: 130305

End: 131678

Strand: Direct

Name: srpC [H]

Synonym: Amuc_0105

Alternate gene names: 187734619

Gene position: 130305-131678 (Clockwise)

Preceding gene: 187734618

Following gene: 187734633

Centisome position: 4.89

GC content: 62.3

Gene sequence:

>1374_bases
ATGTCATCCACGTTCAAACATCTCCCCCTTCTGGCCGCCTGTTTCCTTGGCTCCTGCATGGTAGGCCCTGATTTCCGGAC
GCCGACCAATGACCTCCCCGCCACGTGGGAGGCGAACAGGCCCCCCCACAGTTCGGACAAAGATTTGCGTTCCTGGTGGA
ATATCTTTGGAGACCCCCAGCTCAACCGCCTGGTCTCCACCTCCCTCAACAACAATCCGGACATGAAGGTGGCTTTGCTC
CGCATCCGGGAGGCCAGGGAAAAGCTCCGCGTCTCCCAGGCATCCCTGCTTCCCTCCGCAGACGCCAGCGCCGGGTGGAG
CCTGTCCCCGGACAGAGGTTTTCGCAGCTCCACTTCCCAGAACTTCTCCCTGGGAGCGTCCACCTCCTGGGAGCTGGACC
TCTTTGGCGGCAACCGGCGTTCCATCGAGGCCTCCCGCGCCTCCCTCATGTCCACAGAAGCTTCCGCAGGAGCCGTGCGC
ACAGCCCTGCTGGCGGACGTCGCCACGGCCTACTTTGACTGGATTACCGCCTGCGAACAGCTCCGCATCGCCAGGGAACA
ACTGGAAATCCAACGCAGCACCCTCACCATTGCGGAAAAACGCTACAAAACGGAATTCGCCCCCCGTCTGGATGTGGAGC
AGGCCACCTCCACCGTCGCCTCCACGGAAAGCCGCATCCCGCAACTGGAAGCACAGGTGGCCTCCTCTAAAAACCAGCTC
GCCGTGCTGCTGGGAACATACAATTCCCGTGTAGAACTGACGCTGCCCAAAGCTTCCGTCTTTGAGAAAACGCCCACCGT
TCCGGTAGGCCTCCCCTCCGAACTCCTGCGGCGCAGGCCCGACGTTATCGCCGCTGAGGCGGACCTGCACGCGGCCGTGG
CCAACGTGGGCGTAGCCGTAGCGGATCTGTACCCGCGCTTCAGCCTGACGGGCTCCCTTTCCAGCCGCGGCGGAGATTTC
GGCCAGCTCTTCAGGGAAAACAACAACGCTTGGTCCCTGGGAGGGAATCTGCTCCAGCCCCTGTTCCGGGGCGGAGCCCT
GAGAGCCACGGTACGCGCCCAGAAAGCCGCAGCAGAACAAGCTGCGGAAACTTACCGCAAAACGCTCATTACCGCCGTCT
CCGAGGTGGAGGACGCCCTGATCGCCTATGGCAGCTATACCTCCCAGATGCAATACCTGCACAAGGAAAACAACGCCAAC
AGAGAAGCGTTCCAGCTCTCCCGCACCCTGTACATCAACGGCGAGACGGACTTCCTGAACGTGATCACCGCCCAGCGTTC
CTGGCTCAGCTCGGAGGAATCCCTGGTCACCATGAAGCAGAACATCCGCAAGGCCGTGGTGCAGCTCGCGCGCGCCCTGG
GCGGAGGGTGGTAA

Upstream 100 bases:

>100_bases
CATCGGCCTGGCCTTCGGATGGTACCCCTCCTGGAAGGCGTCCAAGATGGACCCCATTGATGCCCTTCGCCACGAATAAC
ACCTTACTTTTTATTTTTCC

Downstream 100 bases:

>100_bases
CCAGCCGCTCCCTCCAAAGGCCGGGGTCGCCATCCCCGGCAAACGGAACCCTGATTTTTCAACAGGGGACACGGCAACAA
GGGAATGACTGAAGAATCAT

Product: RND efflux system, outer membrane lipoprotein, NodT family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MSSTFKHLPLLAACFLGSCMVGPDFRTPTNDLPATWEANRPPHSSDKDLRSWWNIFGDPQLNRLVSTSLNNNPDMKVALL
RIREAREKLRVSQASLLPSADASAGWSLSPDRGFRSSTSQNFSLGASTSWELDLFGGNRRSIEASRASLMSTEASAGAVR
TALLADVATAYFDWITACEQLRIAREQLEIQRSTLTIAEKRYKTEFAPRLDVEQATSTVASTESRIPQLEAQVASSKNQL
AVLLGTYNSRVELTLPKASVFEKTPTVPVGLPSELLRRRPDVIAAEADLHAAVANVGVAVADLYPRFSLTGSLSSRGGDF
GQLFRENNNAWSLGGNLLQPLFRGGALRATVRAQKAAAEQAAETYRKTLITAVSEVEDALIAYGSYTSQMQYLHKENNAN
REAFQLSRTLYINGETDFLNVITAQRSWLSSEESLVTMKQNIRKAVVQLARALGGGW

Sequences:

>Translated_457_residues
MSSTFKHLPLLAACFLGSCMVGPDFRTPTNDLPATWEANRPPHSSDKDLRSWWNIFGDPQLNRLVSTSLNNNPDMKVALL
RIREAREKLRVSQASLLPSADASAGWSLSPDRGFRSSTSQNFSLGASTSWELDLFGGNRRSIEASRASLMSTEASAGAVR
TALLADVATAYFDWITACEQLRIAREQLEIQRSTLTIAEKRYKTEFAPRLDVEQATSTVASTESRIPQLEAQVASSKNQL
AVLLGTYNSRVELTLPKASVFEKTPTVPVGLPSELLRRRPDVIAAEADLHAAVANVGVAVADLYPRFSLTGSLSSRGGDF
GQLFRENNNAWSLGGNLLQPLFRGGALRATVRAQKAAAEQAAETYRKTLITAVSEVEDALIAYGSYTSQMQYLHKENNAN
REAFQLSRTLYINGETDFLNVITAQRSWLSSEESLVTMKQNIRKAVVQLARALGGGW
>Mature_456_residues
SSTFKHLPLLAACFLGSCMVGPDFRTPTNDLPATWEANRPPHSSDKDLRSWWNIFGDPQLNRLVSTSLNNNPDMKVALLR
IREAREKLRVSQASLLPSADASAGWSLSPDRGFRSSTSQNFSLGASTSWELDLFGGNRRSIEASRASLMSTEASAGAVRT
ALLADVATAYFDWITACEQLRIAREQLEIQRSTLTIAEKRYKTEFAPRLDVEQATSTVASTESRIPQLEAQVASSKNQLA
VLLGTYNSRVELTLPKASVFEKTPTVPVGLPSELLRRRPDVIAAEADLHAAVANVGVAVADLYPRFSLTGSLSSRGGDFG
QLFRENNNAWSLGGNLLQPLFRGGALRATVRAQKAAAEQAAETYRKTLITAVSEVEDALIAYGSYTSQMQYLHKENNANR
EAFQLSRTLYINGETDFLNVITAQRSWLSSEESLVTMKQNIRKAVVQLARALGGGW

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=461, Percent_Identity=30.3687635574837, Blast_Score=211, Evalue=8e-56,
Organism=Escherichia coli, GI2367348, Length=436, Percent_Identity=24.5412844036697, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50091; Mature: 49960

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTFKHLPLLAACFLGSCMVGPDFRTPTNDLPATWEANRPPHSSDKDLRSWWNIFGDPQ
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
LNRLVSTSLNNNPDMKVALLRIREAREKLRVSQASLLPSADASAGWSLSPDRGFRSSTSQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
NFSLGASTSWELDLFGGNRRSIEASRASLMSTEASAGAVRTALLADVATAYFDWITACEQ
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRIAREQLEIQRSTLTIAEKRYKTEFAPRLDVEQATSTVASTESRIPQLEAQVASSKNQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCE
AVLLGTYNSRVELTLPKASVFEKTPTVPVGLPSELLRRRPDVIAAEADLHAAVANVGVAV
EEEEECCCCEEEEEECCHHHHCCCCCCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHH
ADLYPRFSLTGSLSSRGGDFGQLFRENNNAWSLGGNLLQPLFRGGALRATVRAQKAAAEQ
HHHCCCCEECCCCCCCCCHHHHHHHCCCCEEECCHHHHHHHHCCCCEEHHHHHHHHHHHH
AAETYRKTLITAVSEVEDALIAYGSYTSQMQYLHKENNANREAFQLSRTLYINGETDFLN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHH
VITAQRSWLSSEESLVTMKQNIRKAVVQLARALGGGW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSTFKHLPLLAACFLGSCMVGPDFRTPTNDLPATWEANRPPHSSDKDLRSWWNIFGDPQ
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
LNRLVSTSLNNNPDMKVALLRIREAREKLRVSQASLLPSADASAGWSLSPDRGFRSSTSQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
NFSLGASTSWELDLFGGNRRSIEASRASLMSTEASAGAVRTALLADVATAYFDWITACEQ
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRIAREQLEIQRSTLTIAEKRYKTEFAPRLDVEQATSTVASTESRIPQLEAQVASSKNQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCE
AVLLGTYNSRVELTLPKASVFEKTPTVPVGLPSELLRRRPDVIAAEADLHAAVANVGVAV
EEEEECCCCEEEEEECCHHHHCCCCCCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHH
ADLYPRFSLTGSLSSRGGDFGQLFRENNNAWSLGGNLLQPLFRGGALRATVRAQKAAAEQ
HHHCCCCEECCCCCCCCCHHHHHHHCCCCEEECCHHHHHHHHCCCCEEHHHHHHHHHHHH
AAETYRKTLITAVSEVEDALIAYGSYTSQMQYLHKENNANREAFQLSRTLYINGETDFLN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHH
VITAQRSWLSSEESLVTMKQNIRKAVVQLARALGGGW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]