| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734541
Identifier: 187734541
GI number: 187734541
Start: 31260
End: 33593
Strand: Direct
Name: 187734541
Synonym: Amuc_0025
Alternate gene names: NA
Gene position: 31260-33593 (Clockwise)
Preceding gene: 187734540
Following gene: 187734542
Centisome position: 1.17
GC content: 57.8
Gene sequence:
>2334_bases ATGCCGCGAAGGATGATAAAAACGTCCTTCTGGCATCGTAATAAGTCGAAAAACGCACTGGTTCCCTCCCACCTCTTTCT GCTATTATCAAGTAATCCCTTCCACATGAATATTTCACATCTTCTTCTCTGCACTTCCCTGCTCGCGGCTCCCGTCTGCG CGGCACAGGGCCTGACGGAAACTGAAACGGAAACGCCGGCCTCCTCCAGCCGCCTGCCGGCGCCCCTGGCACAAAAAATT GCCTCCGGAGACTTTGATGGCCTGCAGACGGAACTGCGCTCCACCCTCCTGAAGGCTGGAGAACAAACGAAATCCGAACA GAAACTGCTCCAGAACAAGCAGTACCGCCATTTGCTGGACATTCACGAACTCCTGCGCGTCACGGGACCGGACAAGGTGA AAGCCGTTTTCTCCAAAAGCGCGCAAGATGCCGCTTTCATCAAAACCTTTCTACAGGACCCGGTGTGGATGGAGCTTTAC CTTGGAGCAGGCCTGATTCCGGAAAATTCACCGGAAGGCCTTCAAATCCTCTCCGACATCTGGAAAGCGGACGGCAAGAG CCCGGATTTCCGGAATTACCAATCCCTGGCCACCGGGCTGGCCTCTGTCTTTTCCACCGGCCCCATGGCGGGAAGGCTCA AAACCAACTCCGCCAACAGCAATCCGGTGCGCCGCTACCGGATTTTCAAAAAACTGCATCAGGAAAACAGGCTGCATCCG GGATTCATCAAACTGCGCCCATGGGAAATGCGCTTCGTCGTGGGAAGTCCCTGGGACGATAAATCCTATGAATGGAGCAA TGAACACGTCAACCTCCCCTGGCGGCGATACACGGCCGCCTGCTGGGCCGCTCCCTATACGGGCCACAATTTCTTTGGCG ATACCATTCAGGGGCCCCTTTTCTACGTGCCGTGGAGGGATCTTAACACGACCGCGGAAAACACGCAGATCATCGGCGGC GTTTGCGGCGGCCTCTCCTATTTTGGCACCATGGCGGCCCAGGCCCACGGCATCCCCGCTTATCCGGTAGGACAACCGGG CCACTGCGCGTACGCGGTGCGCGTGAAACGGGGGGAATGGAAAGGCGGCTTCGGCGGACCAGACGGAGGCATGCACAACC ATATCTTCGGCTCCCAGGCTCCTACTTCCTACCTGCTGATGGAAAATGTCTTTGCTGACAACGATAAGGCGGACCAGGCC TACCTGTGGGCCGCCCAGGCCCGGCTGGACGAGGCTTCCGGCAACAAGGACAAGGCCATTCAGGCATGGGAGGAAGCGCT CAGGCAAACACCGCTGCACCCGTTCTTCCGCACGGAGCTTCAACGCCTGCTGATGGAAAAGGAAGGCATGCAACCTGTCG ACTGGTACGTTTACGCCAAGGACGCCCTTTCCCACTATCAGGGCAACGGCTTTGCCGCATTCGACATCCTCAAGGACGTG CAGAATAAATTCCTGATGGATATTCCGCCCGCAGACCGGATTGCCTGGTTCCGGGACCTGCATGAAGCCATCGCCACCAC TCCCACATCATGGGCGGTGAAATTCCAGCCCGTGCTGGACTCCCAATCTGCCTTCCTGGCAAATCCGCAGGAAAAAGCGG CCTATCTGGAAACAGTCCTCTCCACCCACCTGAAAACGGGGGACGGCACCAACTTTGGCCAGGCGTTGGAATGGGGCGTG AAAAACTTTGTGGAAAACGGACAGGCGGACGTGTTCTCCAACGCATTCGCCAAGGTAGCCCAGCAAACGGGAAAAACCGG GACCTCCGGGAAAGCCCCCGACCCCAAAAAGCTGAAGGAAGCCTACGGCAAAGCCATCTATGCCACGGAAACGGCCCGCT CCATTCCGGCCTTCCAGGCCTTGAGCAAAGCGGCGGCCTCTTTCTCCGGCGCCAATGCGACGAACAATACGGTCAAGGCG TCCATTCCGCAGGGCTGGAAACTGGTGCCCGCAGACGGCATGGTCCGGTGCTCCACCACGAGCCAGTGGGACAGCCCCTG GGACCATATCAACCTGCTGCGTCCCTGCGGCGGAGCCCAGCATACGGATAAGGAAGCCAATCCGAACGTCATTGTAGAAC TGAAAAACGGAGTGAACCTGGCCGGGCTGGTAGTCACCAAGCGCGACGGCAATGAAAACCGGATGAAGAAAATGGAGGTC TCCACGTCCACGGACGGAGCCACCTGGTTCCCCCTGGCCGCCACGGAAAACATGCCCAAGGAATGGGTCATCACCGCACC GGAAGGCACCAAAGCCAAGTGGATCAAGGTGGAAGCCAAAAACGCACAGCCGGAATTCATGCACCTGCGCCATATCCTCG TTTACGAAAAATAA
Upstream 100 bases:
>100_bases ACGGCTGCACCGCTTTCCGACCTTTCATCTGGAAGCGGGAGCCGGGCTCATCCTCATCGGCCTGGGCGTCAAAATGCTCT GTGACCATTTGTGCTGAAAT
Downstream 100 bases:
>100_bases ATTCTCCATTAACGCCATGCTTCATCACATCAATCCCGTTTCCGGCCTGCTGGCCGCAGCCCTCTTCCTGTCCGCCCCTG TTCAGGCGGCCCTCCCCGTT
Product: Tetratricopeptide TPR_2 repeat protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein
Number of amino acids: Translated: 777; Mature: 776
Protein sequence:
>777_residues MPRRMIKTSFWHRNKSKNALVPSHLFLLLSSNPFHMNISHLLLCTSLLAAPVCAAQGLTETETETPASSSRLPAPLAQKI ASGDFDGLQTELRSTLLKAGEQTKSEQKLLQNKQYRHLLDIHELLRVTGPDKVKAVFSKSAQDAAFIKTFLQDPVWMELY LGAGLIPENSPEGLQILSDIWKADGKSPDFRNYQSLATGLASVFSTGPMAGRLKTNSANSNPVRRYRIFKKLHQENRLHP GFIKLRPWEMRFVVGSPWDDKSYEWSNEHVNLPWRRYTAACWAAPYTGHNFFGDTIQGPLFYVPWRDLNTTAENTQIIGG VCGGLSYFGTMAAQAHGIPAYPVGQPGHCAYAVRVKRGEWKGGFGGPDGGMHNHIFGSQAPTSYLLMENVFADNDKADQA YLWAAQARLDEASGNKDKAIQAWEEALRQTPLHPFFRTELQRLLMEKEGMQPVDWYVYAKDALSHYQGNGFAAFDILKDV QNKFLMDIPPADRIAWFRDLHEAIATTPTSWAVKFQPVLDSQSAFLANPQEKAAYLETVLSTHLKTGDGTNFGQALEWGV KNFVENGQADVFSNAFAKVAQQTGKTGTSGKAPDPKKLKEAYGKAIYATETARSIPAFQALSKAAASFSGANATNNTVKA SIPQGWKLVPADGMVRCSTTSQWDSPWDHINLLRPCGGAQHTDKEANPNVIVELKNGVNLAGLVVTKRDGNENRMKKMEV STSTDGATWFPLAATENMPKEWVITAPEGTKAKWIKVEAKNAQPEFMHLRHILVYEK
Sequences:
>Translated_777_residues MPRRMIKTSFWHRNKSKNALVPSHLFLLLSSNPFHMNISHLLLCTSLLAAPVCAAQGLTETETETPASSSRLPAPLAQKI ASGDFDGLQTELRSTLLKAGEQTKSEQKLLQNKQYRHLLDIHELLRVTGPDKVKAVFSKSAQDAAFIKTFLQDPVWMELY LGAGLIPENSPEGLQILSDIWKADGKSPDFRNYQSLATGLASVFSTGPMAGRLKTNSANSNPVRRYRIFKKLHQENRLHP GFIKLRPWEMRFVVGSPWDDKSYEWSNEHVNLPWRRYTAACWAAPYTGHNFFGDTIQGPLFYVPWRDLNTTAENTQIIGG VCGGLSYFGTMAAQAHGIPAYPVGQPGHCAYAVRVKRGEWKGGFGGPDGGMHNHIFGSQAPTSYLLMENVFADNDKADQA YLWAAQARLDEASGNKDKAIQAWEEALRQTPLHPFFRTELQRLLMEKEGMQPVDWYVYAKDALSHYQGNGFAAFDILKDV QNKFLMDIPPADRIAWFRDLHEAIATTPTSWAVKFQPVLDSQSAFLANPQEKAAYLETVLSTHLKTGDGTNFGQALEWGV KNFVENGQADVFSNAFAKVAQQTGKTGTSGKAPDPKKLKEAYGKAIYATETARSIPAFQALSKAAASFSGANATNNTVKA SIPQGWKLVPADGMVRCSTTSQWDSPWDHINLLRPCGGAQHTDKEANPNVIVELKNGVNLAGLVVTKRDGNENRMKKMEV STSTDGATWFPLAATENMPKEWVITAPEGTKAKWIKVEAKNAQPEFMHLRHILVYEK >Mature_776_residues PRRMIKTSFWHRNKSKNALVPSHLFLLLSSNPFHMNISHLLLCTSLLAAPVCAAQGLTETETETPASSSRLPAPLAQKIA SGDFDGLQTELRSTLLKAGEQTKSEQKLLQNKQYRHLLDIHELLRVTGPDKVKAVFSKSAQDAAFIKTFLQDPVWMELYL GAGLIPENSPEGLQILSDIWKADGKSPDFRNYQSLATGLASVFSTGPMAGRLKTNSANSNPVRRYRIFKKLHQENRLHPG FIKLRPWEMRFVVGSPWDDKSYEWSNEHVNLPWRRYTAACWAAPYTGHNFFGDTIQGPLFYVPWRDLNTTAENTQIIGGV CGGLSYFGTMAAQAHGIPAYPVGQPGHCAYAVRVKRGEWKGGFGGPDGGMHNHIFGSQAPTSYLLMENVFADNDKADQAY LWAAQARLDEASGNKDKAIQAWEEALRQTPLHPFFRTELQRLLMEKEGMQPVDWYVYAKDALSHYQGNGFAAFDILKDVQ NKFLMDIPPADRIAWFRDLHEAIATTPTSWAVKFQPVLDSQSAFLANPQEKAAYLETVLSTHLKTGDGTNFGQALEWGVK NFVENGQADVFSNAFAKVAQQTGKTGTSGKAPDPKKLKEAYGKAIYATETARSIPAFQALSKAAASFSGANATNNTVKAS IPQGWKLVPADGMVRCSTTSQWDSPWDHINLLRPCGGAQHTDKEANPNVIVELKNGVNLAGLVVTKRDGNENRMKKMEVS TSTDGATWFPLAATENMPKEWVITAPEGTKAKWIKVEAKNAQPEFMHLRHILVYEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86211; Mature: 86079
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRMIKTSFWHRNKSKNALVPSHLFLLLSSNPFHMNISHLLLCTSLLAAPVCAAQGLTE CCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCCC TETETPASSSRLPAPLAQKIASGDFDGLQTELRSTLLKAGEQTKSEQKLLQNKQYRHLLD CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IHELLRVTGPDKVKAVFSKSAQDAAFIKTFLQDPVWMELYLGAGLIPENSPEGLQILSDI HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCHHHHHHHH WKADGKSPDFRNYQSLATGLASVFSTGPMAGRLKTNSANSNPVRRYRIFKKLHQENRLHP HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCC GFIKLRPWEMRFVVGSPWDDKSYEWSNEHVNLPWRRYTAACWAAPYTGHNFFGDTIQGPL CEEEECCEEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCE FYVPWRDLNTTAENTQIIGGVCGGLSYFGTMAAQAHGIPAYPVGQPGHCAYAVRVKRGEW EEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC KGGFGGPDGGMHNHIFGSQAPTSYLLMENVFADNDKADQAYLWAAQARLDEASGNKDKAI CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHEEEHHHHHHHHCCCCHHHHH QAWEEALRQTPLHPFFRTELQRLLMEKEGMQPVDWYVYAKDALSHYQGNGFAAFDILKDV HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCEEHHHHHHHH QNKFLMDIPPADRIAWFRDLHEAIATTPTSWAVKFQPVLDSQSAFLANPQEKAAYLETVL HHHEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHH STHLKTGDGTNFGQALEWGVKNFVENGQADVFSNAFAKVAQQTGKTGTSGKAPDPKKLKE HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH AYGKAIYATETARSIPAFQALSKAAASFSGANATNNTVKASIPQGWKLVPADGMVRCSTT HHCCEEEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCEEEECCC SQWDSPWDHINLLRPCGGAQHTDKEANPNVIVELKNGVNLAGLVVTKRDGNENRMKKMEV CCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHEEEEE STSTDGATWFPLAATENMPKEWVITAPEGTKAKWIKVEAKNAQPEFMHLRHILVYEK ECCCCCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHEECC >Mature Secondary Structure PRRMIKTSFWHRNKSKNALVPSHLFLLLSSNPFHMNISHLLLCTSLLAAPVCAAQGLTE CCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCCC TETETPASSSRLPAPLAQKIASGDFDGLQTELRSTLLKAGEQTKSEQKLLQNKQYRHLLD CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IHELLRVTGPDKVKAVFSKSAQDAAFIKTFLQDPVWMELYLGAGLIPENSPEGLQILSDI HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCHHHHHHHH WKADGKSPDFRNYQSLATGLASVFSTGPMAGRLKTNSANSNPVRRYRIFKKLHQENRLHP HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCC GFIKLRPWEMRFVVGSPWDDKSYEWSNEHVNLPWRRYTAACWAAPYTGHNFFGDTIQGPL CEEEECCEEEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCE FYVPWRDLNTTAENTQIIGGVCGGLSYFGTMAAQAHGIPAYPVGQPGHCAYAVRVKRGEW EEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC KGGFGGPDGGMHNHIFGSQAPTSYLLMENVFADNDKADQAYLWAAQARLDEASGNKDKAI CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHEEEHHHHHHHHCCCCHHHHH QAWEEALRQTPLHPFFRTELQRLLMEKEGMQPVDWYVYAKDALSHYQGNGFAAFDILKDV HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCEEHHHHHHHH QNKFLMDIPPADRIAWFRDLHEAIATTPTSWAVKFQPVLDSQSAFLANPQEKAAYLETVL HHHEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHH STHLKTGDGTNFGQALEWGVKNFVENGQADVFSNAFAKVAQQTGKTGTSGKAPDPKKLKE HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH AYGKAIYATETARSIPAFQALSKAAASFSGANATNNTVKASIPQGWKLVPADGMVRCSTT HHCCEEEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCEEEECCC SQWDSPWDHINLLRPCGGAQHTDKEANPNVIVELKNGVNLAGLVVTKRDGNENRMKKMEV CCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHEEEEE STSTDGATWFPLAATENMPKEWVITAPEGTKAKWIKVEAKNAQPEFMHLRHILVYEK ECCCCCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA