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The map label for this gene is ycaD [C]

Identifier: 187734536

GI number: 187734536

Start: 25433

End: 26587

Strand: Reverse

Name: ycaD [C]

Synonym: Amuc_0020

Alternate gene names: 187734536

Gene position: 26587-25433 (Counterclockwise)

Preceding gene: 187734537

Following gene: 187734530

Centisome position: 1.0

GC content: 59.91

Gene sequence:

>1155_bases
ATGCGTACATTTACCTGGCCTATTGCCCTGCTGCTGGCGGGGCTTCTTTTCCAGACAGTGGCGTTTGCCGTGTTGAATAC
GGTTGTTCCCCTGTGGATGGAGCAATTTGATGCCGCCACCTGGGAGGCAGGGCTGGTGGGGGCTTTCTTTTTTCTCGGGA
ACCTGGCCGGAACGCTGCTGGCTGGCGGCGTGATTCGCCGGGCCGGGTTCAAAGGAAGTTACCAATATGCATGCCTTTTA
TGCGCAGTCTCCACCGTTCTGCTGCCTGTGTTTCCCGGCGTGCCGGCCTGGAGCGGCCTCCGGCTGCTGGCGGGGATCAG
CTGCGCCCTGGTCTGGGTGGTGGTGGAAAGCGCCCTGCTGAGGGCCGGAACGCTGCAAACCCGCGGCATTCTGCTGGCTT
CCTACATGGTGGTTTATTATCTGGGTACGGTGCTGGGGCAGTTGCTTCTGGGCTGGTTCCCCAGCGATATGCCCCTGATT
GTGACGGAAGTCTGCATTTTATCAGTGGCGGGCATGGTTCCGCTGATGTTTGCGCGTCTGGAGCCGGGCAATGGACAGGT
TTCATCCTCCTCCCATATAGAGATTCGGACACTGCTGAGACGCCGCAGCGTCTTTCTGGGTGTTGTGGGATGTGTGATTT
CCGGCGTGGTATTGGGTACTATTTATTGCCTGATGCCCCTGTTCCTGAAGCACCAGGGAATGGACCACTCTTCCGTGGGA
TACTGGATGGCCCTGCTGATTGCCGCTGCCATTCTGGGGCAGTGGCCCATGGGGCGGCTGGCGGACAGGTACGGCCGCGC
TTTCGTCATGAAATGCCAGTCCCTGCTGGTGGCGGCGGCCTGTGCCGGGCTGATGCTGAAGGGGGGGCTGATGGCTCCCT
CCCTGATTGCTCTGGGGCTGGCCGGATTTTCCCTGTACCCTGTTGCCATGGCCTGGGGATGCGAGGAAGCTTCCCGGGAT
GAACTGGTGACCATGAACCAGCTTCTGCTGTTGAGTTATTCCCTGGGCACGCTGGCCGGCCCTTCCCTGACTTCGTTCCT
GATGCAGAGGTATTCCGACAATTGGATGCCTATGGTTATTGCGCTGGTGGCCCTTTCCTTCATGCCTGTGCTGATGCTGG
GCGGCGGCCACGGAAGGAGAAAGCTGTCCCGGTAA

Upstream 100 bases:

>100_bases
TTGTGTCTTTTGTTGATAAGGCGCTTTTTTTGTTTTTCTTTCCGACGGAAGAGGCGGTTGACTGATGCGGCTTTGGTGCT
ATAGTCCCCGCTTTATCGTG

Downstream 100 bases:

>100_bases
CGGGGAGAGAGGGAAACGTCAGGATGCTTTCTCGCCCTGGCCGGCGTTTTTTGCCGGTTCGGGCGCGTCGTTGTCCGCTA
CCTGGTGAATCATGTCCGTC

Product: MFS family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MRTFTWPIALLLAGLLFQTVAFAVLNTVVPLWMEQFDAATWEAGLVGAFFFLGNLAGTLLAGGVIRRAGFKGSYQYACLL
CAVSTVLLPVFPGVPAWSGLRLLAGISCALVWVVVESALLRAGTLQTRGILLASYMVVYYLGTVLGQLLLGWFPSDMPLI
VTEVCILSVAGMVPLMFARLEPGNGQVSSSSHIEIRTLLRRRSVFLGVVGCVISGVVLGTIYCLMPLFLKHQGMDHSSVG
YWMALLIAAAILGQWPMGRLADRYGRAFVMKCQSLLVAAACAGLMLKGGLMAPSLIALGLAGFSLYPVAMAWGCEEASRD
ELVTMNQLLLLSYSLGTLAGPSLTSFLMQRYSDNWMPMVIALVALSFMPVLMLGGGHGRRKLSR

Sequences:

>Translated_384_residues
MRTFTWPIALLLAGLLFQTVAFAVLNTVVPLWMEQFDAATWEAGLVGAFFFLGNLAGTLLAGGVIRRAGFKGSYQYACLL
CAVSTVLLPVFPGVPAWSGLRLLAGISCALVWVVVESALLRAGTLQTRGILLASYMVVYYLGTVLGQLLLGWFPSDMPLI
VTEVCILSVAGMVPLMFARLEPGNGQVSSSSHIEIRTLLRRRSVFLGVVGCVISGVVLGTIYCLMPLFLKHQGMDHSSVG
YWMALLIAAAILGQWPMGRLADRYGRAFVMKCQSLLVAAACAGLMLKGGLMAPSLIALGLAGFSLYPVAMAWGCEEASRD
ELVTMNQLLLLSYSLGTLAGPSLTSFLMQRYSDNWMPMVIALVALSFMPVLMLGGGHGRRKLSR
>Mature_384_residues
MRTFTWPIALLLAGLLFQTVAFAVLNTVVPLWMEQFDAATWEAGLVGAFFFLGNLAGTLLAGGVIRRAGFKGSYQYACLL
CAVSTVLLPVFPGVPAWSGLRLLAGISCALVWVVVESALLRAGTLQTRGILLASYMVVYYLGTVLGQLLLGWFPSDMPLI
VTEVCILSVAGMVPLMFARLEPGNGQVSSSSHIEIRTLLRRRSVFLGVVGCVISGVVLGTIYCLMPLFLKHQGMDHSSVG
YWMALLIAAAILGQWPMGRLADRYGRAFVMKCQSLLVAAACAGLMLKGGLMAPSLIALGLAGFSLYPVAMAWGCEEASRD
ELVTMNQLLLLSYSLGTLAGPSLTSFLMQRYSDNWMPMVIALVALSFMPVLMLGGGHGRRKLSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=384, Percent_Identity=47.65625, Blast_Score=339, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41272; Mature: 41272

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFTWPIALLLAGLLFQTVAFAVLNTVVPLWMEQFDAATWEAGLVGAFFFLGNLAGTLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGGVIRRAGFKGSYQYACLLCAVSTVLLPVFPGVPAWSGLRLLAGISCALVWVVVESALL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAGTLQTRGILLASYMVVYYLGTVLGQLLLGWFPSDMPLIVTEVCILSVAGMVPLMFARL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
EPGNGQVSSSSHIEIRTLLRRRSVFLGVVGCVISGVVLGTIYCLMPLFLKHQGMDHSSVG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YWMALLIAAAILGQWPMGRLADRYGRAFVMKCQSLLVAAACAGLMLKGGLMAPSLIALGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AGFSLYPVAMAWGCEEASRDELVTMNQLLLLSYSLGTLAGPSLTSFLMQRYSDNWMPMVI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
ALVALSFMPVLMLGGGHGRRKLSR
HHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTFTWPIALLLAGLLFQTVAFAVLNTVVPLWMEQFDAATWEAGLVGAFFFLGNLAGTLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGGVIRRAGFKGSYQYACLLCAVSTVLLPVFPGVPAWSGLRLLAGISCALVWVVVESALL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAGTLQTRGILLASYMVVYYLGTVLGQLLLGWFPSDMPLIVTEVCILSVAGMVPLMFARL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
EPGNGQVSSSSHIEIRTLLRRRSVFLGVVGCVISGVVLGTIYCLMPLFLKHQGMDHSSVG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YWMALLIAAAILGQWPMGRLADRYGRAFVMKCQSLLVAAACAGLMLKGGLMAPSLIALGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AGFSLYPVAMAWGCEEASRDELVTMNQLLLLSYSLGTLAGPSLTSFLMQRYSDNWMPMVI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
ALVALSFMPVLMLGGGHGRRKLSR
HHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]