Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 186477828

GI number: 186477828

Start: 3462759

End: 3463487

Strand: Reverse

Name: ompA [H]

Synonym: Bphy_3084

Alternate gene names: 186477828

Gene position: 3463487-3462759 (Counterclockwise)

Preceding gene: 186477829

Following gene: 186477827

Centisome position: 99.55

GC content: 62.69

Gene sequence:

>729_bases
ATGTTCCTTCGTATCTTCACCGCGACGGCCTGCGCAGCCGCGATCGCAGGCTGCACTGCGTATTCCGGTCCCACCCGCAC
CACCGATATCGTCACGTTGTCCAATGGCAGCCAGGCGTATCGCGTCCAATGTCTCGGATTGCTGGAAAGCTCCAAGGCGT
GTATGGACGAAGTGAAGCGCATCTGCGGCGACAAGCCGGCCACGCGCGTTTCGTCGATCGATCACATCACGTCGGACCTG
AAGTCCGAAAACGATCCGCGTGAAATCACGTTCCAGTGCTCGACGCCCGTCGTCCAGCAACCCATTCCGCCCGCGCCAGC
TGCTGTCGTTACGCCTGTAGCGGCTCCCCTCGTCGCGCCTGCGCCCGTTCACCACGCACCCGTTCGCAAGATCACGTTGC
AAGGCGACGCGACGTTCGCGGTCGGAAGCGCAACGCTCACGCCCTTCGCGACGGCCAAACTGGATGACTTCGTCGCGGCA
AACCAGGGCGTCGACGTCGATCGCCTGACGATTGCCGGCTATACCGATTCGACGGGTTCAGCCGAGTTGAACAACCGCCT
GTCGGCGGCACGCGCGCGTTCGGTGCAAGGTTATCTGGCAACGGCAGGCCTGCGTGCTTCGGCTTGGGACGTACAAGGCT
ATGGCAGCGCGTCGCCTGTTGCGCCGAACAAAACGGCCATTGGCCGCGCGAAGAACCGGCGTGTCGAAATTCAGGTCGAC
GGCAAGTAA

Upstream 100 bases:

>100_bases
ACCCGAGCCGCCAGAACCTTTTTTGAGACTTCTCTGATTGGCGCCGAGACACGCACTCACTATCGTCTCTCCACCCCCAA
TCTAATCTGCGAGAAGTCTC

Downstream 100 bases:

>100_bases
GTTTTTCGTTGAAGTACCGGAAGTGGCGGCGTCGGTGACCCATTGACGCCGCCGCGCCTTTTTGTGCTTTCGTGACTCAT
ACGGGACAAGCGAGCACGAT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MFLRIFTATACAAAIAGCTAYSGPTRTTDIVTLSNGSQAYRVQCLGLLESSKACMDEVKRICGDKPATRVSSIDHITSDL
KSENDPREITFQCSTPVVQQPIPPAPAAVVTPVAAPLVAPAPVHHAPVRKITLQGDATFAVGSATLTPFATAKLDDFVAA
NQGVDVDRLTIAGYTDSTGSAELNNRLSAARARSVQGYLATAGLRASAWDVQGYGSASPVAPNKTAIGRAKNRRVEIQVD
GK

Sequences:

>Translated_242_residues
MFLRIFTATACAAAIAGCTAYSGPTRTTDIVTLSNGSQAYRVQCLGLLESSKACMDEVKRICGDKPATRVSSIDHITSDL
KSENDPREITFQCSTPVVQQPIPPAPAAVVTPVAAPLVAPAPVHHAPVRKITLQGDATFAVGSATLTPFATAKLDDFVAA
NQGVDVDRLTIAGYTDSTGSAELNNRLSAARARSVQGYLATAGLRASAWDVQGYGSASPVAPNKTAIGRAKNRRVEIQVD
GK
>Mature_242_residues
MFLRIFTATACAAAIAGCTAYSGPTRTTDIVTLSNGSQAYRVQCLGLLESSKACMDEVKRICGDKPATRVSSIDHITSDL
KSENDPREITFQCSTPVVQQPIPPAPAAVVTPVAAPLVAPAPVHHAPVRKITLQGDATFAVGSATLTPFATAKLDDFVAA
NQGVDVDRLTIAGYTDSTGSAELNNRLSAARARSVQGYLATAGLRASAWDVQGYGSASPVAPNKTAIGRAKNRRVEIQVD
GK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=109, Percent_Identity=42.2018348623853, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25255; Mature: 25255

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRIFTATACAAAIAGCTAYSGPTRTTDIVTLSNGSQAYRVQCLGLLESSKACMDEVKR
CEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHH
ICGDKPATRVSSIDHITSDLKSENDPREITFQCSTPVVQQPIPPAPAAVVTPVAAPLVAP
HHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCC
APVHHAPVRKITLQGDATFAVGSATLTPFATAKLDDFVAANQGVDVDRLTIAGYTDSTGS
CCCCCCCCEEEEECCCCEEEECCCEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
AELNNRLSAARARSVQGYLATAGLRASAWDVQGYGSASPVAPNKTAIGRAKNRRVEIQVD
HHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEEC
GK
CC
>Mature Secondary Structure
MFLRIFTATACAAAIAGCTAYSGPTRTTDIVTLSNGSQAYRVQCLGLLESSKACMDEVKR
CEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHH
ICGDKPATRVSSIDHITSDLKSENDPREITFQCSTPVVQQPIPPAPAAVVTPVAAPLVAP
HHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCC
APVHHAPVRKITLQGDATFAVGSATLTPFATAKLDDFVAANQGVDVDRLTIAGYTDSTGS
CCCCCCCCEEEEECCCCEEEECCCEECCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
AELNNRLSAARARSVQGYLATAGLRASAWDVQGYGSASPVAPNKTAIGRAKNRRVEIQVD
HHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEEC
GK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]