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The map label for this gene is yfbE [C]

Identifier: 186477756

GI number: 186477756

Start: 3377329

End: 3378495

Strand: Reverse

Name: yfbE [C]

Synonym: Bphy_3010

Alternate gene names: 186477756

Gene position: 3378495-3377329 (Counterclockwise)

Preceding gene: 186477757

Following gene: 186477755

Centisome position: 97.11

GC content: 64.44

Gene sequence:

>1167_bases
ATGACCGCGTTCATCCCTTACGGCCGGCAGTCGATCGACGAAGCGGATATTGCCGCCGTCGAAGCAGTCCTGCGTTCCGA
CTGGCTCACGCAAGGCCCGGCGATCGCCGCCTTCGAGGAAGAGTTGGCGCGGCGCGCGGGCGCGCGTCATGCGATCGCAG
TGTGCAACGCGACGGCGGCGCTGCACATCGCATGCGTCGCGGCAGGGCTCGGCCCGAACGATCGTCTGTGGACCGTGCCG
AACACGTTTGTCGCTTCGGCCAATTGCGGACGGTATTGCGGCGCTGAAGTCGATTTCGTCGATATCGATCCGCTCACGTA
TTCCCTCGATGTCGATGCGCTCGAAGCGAAACTGTCGGCGGCGCGCACGACGGGGAGCTTGCCGAAGGTCGTGATTCCTG
TTGCGTTCGCGGGCGGCAGTTGCGACATGCGGCGCGTGAAGCGTCTGTCGGACGAGTACGGCTTCACGGTGATCGAAGAC
GCTTCGCATGCCGTCGGCGCATCGTATGCGGGACGCCCCGTCGGCTGCGGCGACCATGCGCACATGACCGTGTTCAGCTT
CCATCCCGTGAAGATCGTGACGACGGGCGAAGGCGGCGCGGTGCTGACCAACGACGTGGCATTGAGCGAGCGTCTGCGCC
GTCTGCGCAGCCACGGCATCACACGCGACGCCGCGCAAATGGATGAGCCCAACGAAGGCGCATGGTTCTACGAGATGCAG
GAACTGGGCTTCAACTACCGGATCACCGACATTCAGGCCGTGCTCGGGCTGTCGCAACTCAAACGCCTGGATGGATTCCT
CGCGCGACGCCGTGCGCTCGTGAAACGCTACGACACGCTGCTGAAGGACTTGCCGCTGCAGTTGCCGCAACTCGACGCGC
TTGAAGAGTCGGCGTGGCATCTGTACGTGGTGCGGGTGCCGGACGACGGCGCGCATGCGAATCGCCGCGCGGTGTTCGAT
GCATTGCGCAGCGCGGAGATCGGCGTCAACGTGCACTACATCCCCGTGCATCTGCAACCCTACTATCGCCGGCGCGGCTT
CAAGCCAGGCGATTTTCCGCAAGCGGAGCAGTATTACCGCGAGGCGATCAGCCTGCCGCTCTACGCGACGCTCACGGACG
CCGAGCAAGATCGCGTCGTCGCACAACTGAAGCGGGTGCTGGGATGA

Upstream 100 bases:

>100_bases
AGACGGGCAAGCGCGTGACGGAAGGCTTCAAGTACACGTCCGACAACAACGGCTGGTTCCTCAGCGTGGACGAACTGGCC
GCGCTCGACAAGCAACACCC

Downstream 100 bases:

>100_bases
GCCGCGTCGCCATCATTCCCGCACGCGGCGGCAGCAAGCGCATCCCGCACAAGAACATTCGCCTGTTCGACGGCGTGCCC
ATCATCGCGCATTCGATTCG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MTAFIPYGRQSIDEADIAAVEAVLRSDWLTQGPAIAAFEEELARRAGARHAIAVCNATAALHIACVAAGLGPNDRLWTVP
NTFVASANCGRYCGAEVDFVDIDPLTYSLDVDALEAKLSAARTTGSLPKVVIPVAFAGGSCDMRRVKRLSDEYGFTVIED
ASHAVGASYAGRPVGCGDHAHMTVFSFHPVKIVTTGEGGAVLTNDVALSERLRRLRSHGITRDAAQMDEPNEGAWFYEMQ
ELGFNYRITDIQAVLGLSQLKRLDGFLARRRALVKRYDTLLKDLPLQLPQLDALEESAWHLYVVRVPDDGAHANRRAVFD
ALRSAEIGVNVHYIPVHLQPYYRRRGFKPGDFPQAEQYYREAISLPLYATLTDAEQDRVVAQLKRVLG

Sequences:

>Translated_388_residues
MTAFIPYGRQSIDEADIAAVEAVLRSDWLTQGPAIAAFEEELARRAGARHAIAVCNATAALHIACVAAGLGPNDRLWTVP
NTFVASANCGRYCGAEVDFVDIDPLTYSLDVDALEAKLSAARTTGSLPKVVIPVAFAGGSCDMRRVKRLSDEYGFTVIED
ASHAVGASYAGRPVGCGDHAHMTVFSFHPVKIVTTGEGGAVLTNDVALSERLRRLRSHGITRDAAQMDEPNEGAWFYEMQ
ELGFNYRITDIQAVLGLSQLKRLDGFLARRRALVKRYDTLLKDLPLQLPQLDALEESAWHLYVVRVPDDGAHANRRAVFD
ALRSAEIGVNVHYIPVHLQPYYRRRGFKPGDFPQAEQYYREAISLPLYATLTDAEQDRVVAQLKRVLG
>Mature_387_residues
TAFIPYGRQSIDEADIAAVEAVLRSDWLTQGPAIAAFEEELARRAGARHAIAVCNATAALHIACVAAGLGPNDRLWTVPN
TFVASANCGRYCGAEVDFVDIDPLTYSLDVDALEAKLSAARTTGSLPKVVIPVAFAGGSCDMRRVKRLSDEYGFTVIEDA
SHAVGASYAGRPVGCGDHAHMTVFSFHPVKIVTTGEGGAVLTNDVALSERLRRLRSHGITRDAAQMDEPNEGAWFYEMQE
LGFNYRITDIQAVLGLSQLKRLDGFLARRRALVKRYDTLLKDLPLQLPQLDALEESAWHLYVVRVPDDGAHANRRAVFDA
LRSAEIGVNVHYIPVHLQPYYRRRGFKPGDFPQAEQYYREAISLPLYATLTDAEQDRVVAQLKRVLG

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=390, Percent_Identity=36.1538461538462, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI2367285, Length=351, Percent_Identity=30.1994301994302, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42669; Mature: 42538

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFIPYGRQSIDEADIAAVEAVLRSDWLTQGPAIAAFEEELARRAGARHAIAVCNATAA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHH
LHIACVAAGLGPNDRLWTVPNTFVASANCGRYCGAEVDFVDIDPLTYSLDVDALEAKLSA
HEEHHHEECCCCCCCEEECCCCEEECCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHH
ARTTGSLPKVVIPVAFAGGSCDMRRVKRLSDEYGFTVIEDASHAVGASYAGRPVGCGDHA
HHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHCCCCCCCCCCCCCCCC
HMTVFSFHPVKIVTTGEGGAVLTNDVALSERLRRLRSHGITRDAAQMDEPNEGAWFYEMQ
EEEEEEECCEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEHH
ELGFNYRITDIQAVLGLSQLKRLDGFLARRRALVKRYDTLLKDLPLQLPQLDALEESAWH
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEE
LYVVRVPDDGAHANRRAVFDALRSAEIGVNVHYIPVHLQPYYRRRGFKPGDFPQAEQYYR
EEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECHHHHHCCCCCCCCCHHHHHHH
EAISLPLYATLTDAEQDRVVAQLKRVLG
HHHCCCEEEEECCCHHHHHHHHHHHHHC
>Mature Secondary Structure 
TAFIPYGRQSIDEADIAAVEAVLRSDWLTQGPAIAAFEEELARRAGARHAIAVCNATAA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHH
LHIACVAAGLGPNDRLWTVPNTFVASANCGRYCGAEVDFVDIDPLTYSLDVDALEAKLSA
HEEHHHEECCCCCCCEEECCCCEEECCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHH
ARTTGSLPKVVIPVAFAGGSCDMRRVKRLSDEYGFTVIEDASHAVGASYAGRPVGCGDHA
HHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHCCCCCCCCCCCCCCCC
HMTVFSFHPVKIVTTGEGGAVLTNDVALSERLRRLRSHGITRDAAQMDEPNEGAWFYEMQ
EEEEEEECCEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEHH
ELGFNYRITDIQAVLGLSQLKRLDGFLARRRALVKRYDTLLKDLPLQLPQLDALEESAWH
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEE
LYVVRVPDDGAHANRRAVFDALRSAEIGVNVHYIPVHLQPYYRRRGFKPGDFPQAEQYYR
EEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECHHHHHCCCCCCCCCHHHHHHH
EAISLPLYATLTDAEQDRVVAQLKRVLG
HHHCCCEEEEECCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]