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The map label for this gene is fliN [H]

Identifier: 186477686

GI number: 186477686

Start: 3295902

End: 3296366

Strand: Direct

Name: fliN [H]

Synonym: Bphy_2939

Alternate gene names: 186477686

Gene position: 3295902-3296366 (Clockwise)

Preceding gene: 186477685

Following gene: 186477687

Centisome position: 94.73

GC content: 60.22

Gene sequence:

>465_bases
ATGACTGAGTTGAACTCGACACCCGAAATGGACATGCCGGAAGAGTCCAAAGTGAATGATTCGATGCCTGGCTCGGGCTC
CGACGAAGCATCGCTCGACGATTGGGCGAGCGCGCTCGCTGAGCAGAACGACAACACCGCTGTGAGCGCGAGCACTGCGG
GCGTGTTCCAGCCGCTGTCGAAGGTCGAGCCGACCACGACGCGCAACGACATCGACATGATCCTGGACATTCCCGTTCAG
ATGACCGTCGAACTGGGCCGCACGAAAATCGCGATCCGCAACCTGCTGCAACTCGCGCAGGGTTCCGTCGTCGAGCTGGA
TGGTCTGGCAGGCGAACCGATGGACGTGCTCGTCAACGGTTGCCTGATCGCACAGGGCGAAGTGGTTGTCGTGAACGACA
AGTTCGGTATTCGCCTGACGGACATCATCACGCCGTCCGAGCGCATCCGGAAGCTGAACCGATGA

Upstream 100 bases:

>100_bases
GTGCCCGTGATGGAATGCGGCTACGGTATTTTCAATGGGCAATACGCGCTGCGCGTGCAGAAGATGATCAGCGCAGCGGA
ACAGATGAAGGAAGCGGGAT

Downstream 100 bases:

>100_bases
AATACGCAGTATCCCGGGCCGCGTCACACGGGAGCGGCCAGCCGCTTCCGCGCCGCGCCCGTCTCATGTCGACGGTTGCA
CTGGCGTGTCTCACGCTCGG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTELNSTPEMDMPEESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDMILDIPVQ
MTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Sequences:

>Translated_154_residues
MTELNSTPEMDMPEESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDMILDIPVQ
MTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
>Mature_153_residues
TELNSTPEMDMPEESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDMILDIPVQM
TVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=126, Percent_Identity=60.3174603174603, Blast_Score=155, Evalue=1e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 16599; Mature: 16468

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELNSTPEMDMPEESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHH
KVEPTTTRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNG
HCCCCCCCCCCEEEEECCCEEEEHHCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCC
CLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
EEECCCCEEEEECCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
TELNSTPEMDMPEESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHH
KVEPTTTRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNG
HCCCCCCCCCCEEEEECCCEEEEHHCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCC
CLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
EEECCCCEEEEECCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2656645; 11677609; 9324257 [H]